| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,942,730 | C→A | intergenic (‑61/+328) | llmg_1960 ← / ← tenA | hypothetical protein predicted by Glimmer/Critica/transcriptional activator TenA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,942,730 | 0 | C | A | 99.8% | 4441.5 / NA | 1117 | intergenic (‑61/+328) | llmg_1960/tenA | hypothetical protein predicted by Glimmer/Critica/transcriptional activator TenA |
| Reads supporting (aligned to +/- strand): ref base C (2/0); new base A (566/549); total (568/549) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1117 total aligned reads displayed.
ATCAGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATACCAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCTGAA > AM406671/1942584‑1942875 | aTCAGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACa < 1:4916524/149‑1 (MQ=255) cAGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGt > 2:3167737/1‑149 (MQ=255) aaaaaCTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGAc < 2:58212/149‑1 (MQ=255) aaaaaCTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGAc < 1:7839634/149‑1 (MQ=255) aaaaCTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACa > 2:7089020/1‑149 (MQ=255) aaaCTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACaa > 2:8392471/1‑149 (MQ=255) cTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGCGACAAGCt > 1:8573185/1‑149 (MQ=255) ttGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCttt > 1:9482096/1‑149 (MQ=255) tGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCtttt > 1:3413522/1‑149 (MQ=255) gTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCttttt > 1:5580651/1‑149 (MQ=255) ccACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTtct > 1:2411110/1‑149 (MQ=255) aCTAGAAACCCGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCa < 2:7618157/149‑1 (MQ=255) aCTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCa > 1:9053306/1‑149 (MQ=255) cTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCAc < 1:7943411/149‑1 (MQ=255) aGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTAAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGTACCACAATAAATCATAACATCTAAAGATAACAGTAACAAGCTTTTTCTCACtt > 2:2445266/1‑149 (MQ=255) gAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTa > 1:6119353/1‑149 (MQ=255) aaaCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTaa > 1:3911217/1‑149 (MQ=255) aaCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTaaa > 1:7695336/1‑149 (MQ=255) aCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAAATTTGCACCACAATAAAGTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTaaaa > 1:8027301/1‑149 (MQ=255) ccAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAg > 1:8770805/1‑149 (MQ=255) aaTGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAattatt > 2:6987278/1‑149 (MQ=255) tGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTAtttt > 1:3514523/1‑149 (MQ=255) tGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTAtttt < 1:5972248/149‑1 (MQ=255) ggCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTc > 1:5236330/1‑149 (MQ=255) ggCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATGTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTc > 1:5834503/1‑149 (MQ=255) cGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCCAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAg > 1:4190823/1‑149 (MQ=255) tCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTg > 1:1015539/1‑149 (MQ=255) tCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTg < 1:3012004/149‑1 (MQ=255) cAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGaa > 1:6295021/1‑149 (MQ=255) cAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGaa < 1:6944256/149‑1 (MQ=255) cAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGaa > 1:9260810/1‑149 (MQ=255) aGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACCAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAAc < 2:1293472/149‑1 (MQ=255) aGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAAc < 1:467104/149‑1 (MQ=255) aGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAAc < 2:9143807/149‑1 (MQ=255) aTTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACAt > 1:7104601/1‑149 (MQ=255) tttttGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCt < 2:9015250/149‑1 (MQ=255) tttGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTg > 2:8186874/1‑149 (MQ=255) ttGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGa > 1:6839616/1‑149 (MQ=255) cgcTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGAt < 2:3859019/149‑1 (MQ=255) cgcTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGAt < 2:2341855/149‑1 (MQ=255) tGAGTAGCTGAATGTTCCACGACTTCTCCTAAGTAGCAGATAAAATTTTGCACCACAATACATTACAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCa < 2:728481/149‑1 (MQ=255) aGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTTTTTTTTAATATCGAATTATTTTCAAGTGAACATATTGACTCAATAGATTCttt > 2:434508/1‑149 (MQ=255) gTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGCTTCatta > 1:4385566/1‑149 (MQ=255) tAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCattat < 1:8112645/149‑1 (MQ=255) aGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCattatt > 2:7763144/1‑149 (MQ=255) aGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCattatt < 2:523356/149‑1 (MQ=255) tGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTg < 2:2133416/149‑1 (MQ=255) gAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGa < 1:1901042/149‑1 (MQ=255) gTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACgag > 2:1981648/1‑149 (MQ=255) gTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACgag > 1:6421656/1‑149 (MQ=255) ttCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACgaga < 1:2275271/149‑1 (MQ=255) ttCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACgaga < 2:7445707/149‑1 (MQ=255) tCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGAt > 2:3718382/1‑149 (MQ=255) actactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAAt > 2:8513778/1‑149 (MQ=255) actactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAAt > 1:6647204/1‑149 (MQ=255) ctactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATc < 2:6515610/149‑1 (MQ=255) tactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCa < 1:2098875/149‑1 (MQ=255) tactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCa < 2:6693469/149‑1 (MQ=255) ttCTCCTAACTAGCATATAACATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCAttt < 2:4494538/149‑1 (MQ=255) ttCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCAttt < 1:7466899/149‑1 (MQ=255) ctcCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTa < 1:7279445/149‑1 (MQ=255) tcCTAACTAGCATATAAAATTTTGCACAACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTaa > 1:1298735/1‑149 (MQ=255) ccTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTaaa < 1:1197220/149‑1 (MQ=255) cTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCTAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGGGATAATCATTTTaaaa < 2:3055815/149‑1 (MQ=255) tAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAt < 1:5425693/149‑1 (MQ=255) aaCTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAtt > 1:4018069/1‑149 (MQ=255) aaCTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAtt > 1:5003659/1‑149 (MQ=255) cTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAtttt < 1:2754993/149‑1 (MQ=255) aGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTtat > 2:4080774/1‑149 (MQ=255) gCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTtata > 2:8726484/1‑149 (MQ=255) gCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTtata < 2:4763055/149‑1 (MQ=255) atatAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATAtt < 2:1816728/149‑1 (MQ=255) atatAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATAtt > 2:7930134/1‑149 (MQ=255) tataAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATAttt < 1:1453264/149‑1 (MQ=255) ataAAATTTTGCACCACAAGAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTc < 1:4744682/149‑1 (MQ=255) taAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTca > 1:8425272/1‑149 (MQ=255) aaaTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAATCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTcaca < 2:5985606/149‑1 (MQ=255) aaaTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTcaca < 2:1523110/149‑1 (MQ=255) aTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCacaaa < 1:5678235/149‑1 (MQ=255) aTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCacaaa > 1:4518767/1‑149 (MQ=255) ttGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCacaaaaca < 2:264799/149‑1 (MQ=255) ttGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATCTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCacaaaaca < 1:9552005/149‑1 (MQ=255) tGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCGTTTTAAAATTTTATATTTCacaaaacaa < 2:5601880/149‑1 (MQ=255) ccacAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACaaaaaa > 2:9312193/1‑149 (MQ=255) ccacAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACaaaaaa > 2:2834893/1‑149 (MQ=255) cacaATAAATTATAACATCTAAAGATAACAGTGACAATCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGTTAATCATTTTAAAATTTTATATTTCACAAAACAAAAAAt < 2:5378992/149‑1 (MQ=255) caATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATcc > 2:6413390/1‑149 (MQ=255) aaaTTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTTTCTTAATAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCt > 2:6205440/1‑149 (MQ=255) aaTTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTg < 2:6816283/149‑1 (MQ=255) aaTTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTg > 1:1623991/1‑149 (MQ=255) aTTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGa < 2:9506976/149‑1 (MQ=255) ttATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGAc > 2:5098699/1‑149 (MQ=255) ataACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAAt < 1:3175858/138‑1 (MQ=255) tCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAggg > 2:3378435/1‑149 (MQ=255) aaaGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATc < 2:3584064/149‑1 (MQ=255) aaGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCt > 1:826795/1‑149 (MQ=255) aaGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCt > 2:4628134/1‑149 (MQ=255) aGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCTg > 2:1057526/1‑149 (MQ=255) gATAACAGTGACAAGCTTTTTCTCTCTTACAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATGTTTCACAAAACTAAAAATCCCCCTGACTAGGAGGGATCTga > 1:2591/1‑149 (MQ=255) gATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCTga < 2:1670753/149‑1 (MQ=255) | ATCAGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATACCAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCTGAA > AM406671/1942584‑1942875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |