| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,318,548 | (A)7→6 | coding (34/348 nt) | llmg_1344 → | hypothetical protein predicted by Glimmer/Critica |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,318,542 | 0 | A | . | 98.1% | 4412.6 / 62.8 | 957 | coding (28/348 nt) | llmg_1344 | hypothetical protein predicted by Glimmer/Critica |
| Reads supporting (aligned to +/- strand): ref base A (0/18); new base . (468/469); total (469/488) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.89e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1012 total aligned reads displayed.
AAGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTC > AM406671/1318394‑1318686 | ttAATTTTGAGCTTTATTTTTTATGAACAGAGAGAAGTGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATGTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaaaaaagg < 2:5733756/149‑3 (MQ=255) tAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaaaaaaggc > 1:9937784/1‑146 (MQ=255) ttttGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGa > 2:1425570/1‑149 (MQ=255) gCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCt > 1:3488999/1‑149 (MQ=255) gCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCt < 2:193481/149‑1 (MQ=255) tATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTc < 1:1131152/149‑1 (MQ=255) tATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTc < 1:8389078/149‑1 (MQ=255) ttttttATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAg > 1:8991557/1‑149 (MQ=255) ttttATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGc < 2:5189608/149‑1 (MQ=255) tATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCCGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCaa < 1:6958771/149‑1 (MQ=255) aTGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAt < 1:4525544/149‑1 (MQ=255) tGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAtt < 1:567535/149‑1 (MQ=255) aaCAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTg > 1:1929724/1‑149 (MQ=255) aCAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGCTTTTTGGAAAATCACAACCAGTAAAACCGAAAATGAACCTTGGGTTATTGAATCCTTTG‑ACAAAAGGCAGATTTCCTGGTCAGGCCAATTTGc > 2:8899776/1‑149 (MQ=255) cAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCt > 1:2902503/1‑149 (MQ=255) cAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCt < 1:10000380/149‑1 (MQ=255) gagaTAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTAt > 1:9420450/1‑149 (MQ=255) tagatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACACGAAAATGAACCTTGGGTTCTTGAAAAATAAG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAg < 2:6821106/149‑1 (MQ=255) gatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGAc > 2:1099692/1‑149 (MQ=255) gatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGAc > 2:8570861/1‑149 (MQ=255) gaggagCAGGATATGAGAGCAAAATTAGGAAAGACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgc < 1:7697731/149‑1 (MQ=255) aggagCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgca < 2:1758037/149‑1 (MQ=255) aggagCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgca > 1:7071313/1‑149 (MQ=255) gagCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgcaag > 2:7242441/1‑149 (MQ=255) aGGATATGAAAGAAAAAGTAGGAAAGACAAAGATAGATTTTTGGAAAATCAGCACCAGTAAAACCGAAAATGAACCTTGGGTTCTTAAA‑AAAAAAAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGcaagcaag < 2:2285325/149‑1 (MQ=255) atGACAGCAAAATTAGGAAATACAATTCTAGCTTTTTGGATGATCTCCACAGCGCCACCAGAAGATGAACCTTGGGTTCGTGCATCCGGT‑CAAAAGAGCCAGACTACCCCGCCCGGCTAATTTGCTATGGCGACTGCAAGCAagcagta > 2:8237975/1‑147 (MQ=255) tGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCaa > 1:6663347/1‑149 (MQ=255) aaGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTa > 2:6724413/1‑149 (MQ=255) aaGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTa < 2:1208356/149‑1 (MQ=255) aGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTaa > 2:7769914/1‑149 (MQ=255) aGCAAAATTAGGAAATACAATTATAGATTTTTGCAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTaa < 2:2496401/149‑1 (MQ=255) gCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAAt < 1:3963462/149‑1 (MQ=255) gCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAAt < 2:10195590/149‑1 (MQ=255) aaTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCt > 1:4855794/1‑149 (MQ=255) aaTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCt > 1:4598809/1‑149 (MQ=255) tAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGt > 2:2851344/1‑149 (MQ=255) tAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGt > 1:2677125/1‑149 (MQ=255) tAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGt > 1:3068371/1‑149 (MQ=255) aGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTg > 1:5039610/1‑149 (MQ=255) aGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTg < 1:1791620/149‑1 (MQ=255) aGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTg > 2:11226048/1‑149 (MQ=255) aGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTg < 2:3738598/149‑1 (MQ=255) ggAAATACAATTATAGATTTTTGTAAAATCATCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTgg > 2:7013576/1‑149 (MQ=255) ggAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTgg < 1:5363515/149‑1 (MQ=255) gAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGa < 1:1204655/149‑1 (MQ=255) gAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGa < 2:6192828/149‑1 (MQ=255) aaaTACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGTCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGaa < 1:4146746/149‑1 (MQ=255) tACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGa > 1:6216255/1‑149 (MQ=255) cAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGAcc < 2:5320947/149‑1 (MQ=255) aatataGATTTTTGGAAAATCAGCACCAGTAAACCCTAAAATGAACCTTGTGTTCTTGAA‑AAAATAAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCa < 2:4145439/147‑1 (MQ=255) ttATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaa < 1:2829230/149‑1 (MQ=255) ttATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaa > 1:3761493/1‑149 (MQ=255) ataGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCATATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaaaa < 2:437109/149‑1 (MQ=255) ataGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaaaa < 1:7240492/149‑1 (MQ=255) taGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaaaaa < 2:10870938/149‑1 (MQ=255) taGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaaaaa < 2:3872212/149‑1 (MQ=255) taGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaaaaa < 1:2504136/149‑1 (MQ=255) gATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAata < 1:5245391/149‑1 (MQ=255) aTTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAatat < 2:3542844/149‑1 (MQ=255) tttttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATAtt > 1:4302179/1‑149 (MQ=255) ttttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTc > 2:3381594/1‑149 (MQ=255) ttttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTAG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTc < 1:8815006/149‑1 (MQ=255) tttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCa < 1:5150596/149‑1 (MQ=255) aaaaTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGa < 2:6578906/149‑1 (MQ=255) aaaTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGAc < 2:10582264/149‑1 (MQ=255) aaTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTTAGCTGAcc > 1:8024264/1‑149 (MQ=255) tCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGTCCaa < 1:4750723/149‑1 (MQ=255) tCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCaa > 2:8034343/1‑149 (MQ=255) tCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCaa > 2:5968759/1‑149 (MQ=255) cAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAAc > 2:9746595/1‑149 (MQ=255) cAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACACAAAAATATTCAGCTGACCAAc < 2:2123605/149‑1 (MQ=255) cAGCACCAGTAAACCCGAAAATGAACCCTGTGTTCTTAAATCCTTT‑TAAAAAAGGCAGATAACCTGGTCAAGCCCATTTGCTATGAAGACTGCAAGCAAGCAGCAACCAATAGCTAGTGGAATGACCCAAAAATATTCAGCCGACCAAc < 2:3095123/149‑1 (MQ=255) gcgccAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATGTGATATGAAGACGGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACat < 2:7476250/146‑1 (MQ=255) aCCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataa > 1:9630519/1‑149 (MQ=255) aGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAatat < 1:1522343/149‑1 (MQ=255) gTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTCTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAAtata < 1:9873618/149‑1 (MQ=255) aaCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGc < 2:5572341/149‑1 (MQ=255) aaCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGc > 1:2325899/1‑149 (MQ=255) aaCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTGCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGc < 2:4889948/149‑1 (MQ=255) cccGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCaa < 1:10812500/149‑1 (MQ=255) cccGAAAATGAACCTTGGGTTCTTGAATCCTGTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCaa < 1:861975/149‑1 (MQ=255) ccGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAAt > 1:11149635/1‑149 (MQ=255) ccGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAAt < 1:10559735/149‑1 (MQ=255) cGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATg > 2:4697464/1‑149 (MQ=255) aaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGAt > 1:7473390/1‑149 (MQ=255) aCCTTGGGTTCTTGAATCCTTTG‑AAAAANGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCTACATAATATAGGCAATGAGATAAAAt > 1:6357981/1‑149 (MQ=255) aCCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAAt < 2:91234/149‑1 (MQ=255) ccTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATa > 2:9816895/1‑149 (MQ=255) ccTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATa > 2:5058754/1‑149 (MQ=255) ccTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATa < 1:10982206/149‑1 (MQ=255) ttGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataa > 2:8785854/1‑126 (MQ=255) ttGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACt < 2:3214579/149‑1 (MQ=255) gggTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTg > 2:9390682/1‑149 (MQ=255) ttCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGAc < 1:2078634/149‑1 (MQ=255) ttCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGAc < 1:10266105/149‑1 (MQ=255) ttGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTgg > 1:3225677/1‑149 (MQ=255) gAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGtt < 2:10451243/149‑1 (MQ=255) gAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGtt < 1:5907064/149‑1 (MQ=255) aTCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAg > 1:7864161/1‑149 (MQ=255) cTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTc > 1:1330823/1‑149 (MQ=255) | AAGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTC > AM406671/1318394‑1318686 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |