| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 2,183,058 | (A)5→4 | coding (399/1161 nt) | llmg_2218 ← | predicted transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 2,183,054 | 0 | A | . | 99.7% | 6228.2 / 5.4 | 1300 | coding (403/1161 nt) | llmg_2218 | predicted transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (1/3); new base . (702/593); total (704/596) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1424 total aligned reads displayed.
TTAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGAAAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGCTG > AM406671/2182906‑2183198 | tAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaa < 2:9347180/149‑1 (MQ=255) tAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaa > 2:393825/1‑149 (MQ=255) cTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaat < 2:1365383/149‑2 (MQ=255) ttttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatc < 1:9260809/149‑3 (MQ=255) ttttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatc > 1:8349899/1‑147 (MQ=255) ttttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatc < 1:5052955/149‑3 (MQ=255) ttttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatc > 1:1195194/1‑147 (MQ=255) ttttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatc < 2:7204083/149‑3 (MQ=255) tttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatcc > 2:7942302/1‑146 (MQ=255) ttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatcct < 2:8637567/149‑5 (MQ=255) ttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatcct < 1:2216926/149‑5 (MQ=255) tATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTg > 2:10118765/1‑149 (MQ=255) tttCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGtt > 1:8139530/1‑149 (MQ=255) ttCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTc < 1:6898412/149‑1 (MQ=255) cTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCg > 2:8412307/1‑149 (MQ=255) ttGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCgg > 2:6087308/1‑149 (MQ=255) gATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGaa > 1:3617551/1‑149 (MQ=255) gATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGaa < 1:4669640/149‑1 (MQ=255) attattCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAAt < 1:4859389/149‑1 (MQ=255) attCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATCAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCAGGAAtgtg > 2:591338/1‑149 (MQ=255) ttCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTCATAATATAAG‑AAAATCCTGTTCCGGAATATGc > 2:5202204/1‑149 (MQ=255) tCGCATATTTGTGTTCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCa < 2:11214626/149‑1 (MQ=255) atatTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAg < 1:4153558/149‑1 (MQ=255) tatTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGt > 1:3948976/1‑149 (MQ=255) atTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTc > 1:8768064/1‑149 (MQ=255) tttGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTcc < 1:108874/149‑1 (MQ=255) tgtgtgCTTCATTTTGAATCATTTCTGCTTCCGCAAAGTCTTCTCTTAACTGTATCATATCCAATCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATGATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCaa < 2:6370361/149‑1 (MQ=255) gtgtgCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCATCCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATCATATAAG‑AAAATCCTGTTCCGTAATGTGCATGAGTCCAAg < 2:5625338/149‑1 (MQ=255) gtgtgCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAg < 1:5575184/149‑1 (MQ=255) gtgCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCa < 1:6498929/149‑1 (MQ=255) ttCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGc < 1:10703857/149‑1 (MQ=255) cATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCat < 1:2825769/149‑1 (MQ=255) tttGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatcaa > 1:3369169/1‑149 (MQ=255) tttGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatcaa < 1:2482989/149‑1 (MQ=255) tGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatcaatc < 2:4110176/149‑1 (MQ=255) aTTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCAcatca > 2:2401902/1‑149 (MQ=255) ttCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATa < 1:7048244/149‑1 (MQ=255) gCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGt > 2:3635114/1‑149 (MQ=255) gCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGt > 1:7409133/1‑149 (MQ=255) ccGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCa < 1:4437511/149‑1 (MQ=255) ccGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCa > 2:283615/1‑149 (MQ=255) gCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCaaa < 1:6687932/149‑1 (MQ=255) gCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCaaa > 2:8242331/1‑149 (MQ=255) cAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATACTGAACCAAATAATCATCATTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATGAAATCATAAGACAGCaaaa > 2:3226916/1‑149 (MQ=255) aaCTCTTCTCTTACCTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAtt < 1:6242738/149‑1 (MQ=255) aCTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCACAAttt > 2:546789/1‑149 (MQ=255) aCTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAttt > 2:8862142/1‑149 (MQ=255) ctcttctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCCTGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAtttt < 1:3764277/149‑1 (MQ=255) tcttctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAttttt < 2:1139936/149‑1 (MQ=255) cttctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTc < 2:6517364/149‑1 (MQ=255) ttctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTcc < 1:296022/149‑1 (MQ=255) tctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCa > 1:3224516/1‑149 (MQ=255) ctcttAACTGTATCATATCCAACCAGTTGATCTAATGAACAAAATAATCATCCTTACTTCCATTGCTAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAACTTTTTCCAc > 2:6765568/1‑149 (MQ=255) ttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACttt > 2:9497661/1‑149 (MQ=255) aCTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAACTTTTTCTACTTTCaa > 2:3391051/1‑149 (MQ=255) tGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAAt < 2:2982648/149‑1 (MQ=255) aTCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGc > 2:10811554/1‑149 (MQ=255) atatCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTc < 2:697604/149‑1 (MQ=255) tatCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCa > 1:5297587/1‑149 (MQ=255) ccAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAAc < 2:7294502/149‑1 (MQ=255) aaCCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGa < 2:8076352/149‑1 (MQ=255) aaCCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGa > 2:2626130/1‑149 (MQ=255) aCCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTACGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTAAAATAGCTTCAAACGaa < 2:4896706/149‑1 (MQ=255) aGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAg > 2:6244190/1‑149 (MQ=255) gTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAgg > 2:10474435/1‑149 (MQ=255) gTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAgg > 1:1344779/1‑149 (MQ=255) ttGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGa < 2:4655428/149‑1 (MQ=255) ttGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGa > 1:10305003/1‑149 (MQ=255) tGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGAt < 1:5786513/149‑1 (MQ=255) gATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGAtt < 1:9363784/149‑1 (MQ=255) ataATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTAc > 1:8491571/1‑149 (MQ=255) gAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCaa < 2:4364289/149‑1 (MQ=255) gAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCaa > 2:5076529/1‑149 (MQ=255) gAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCaa < 1:11078878/149‑1 (MQ=255) gAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCaa > 1:9890362/1‑149 (MQ=255) aCAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACt < 1:1988564/149‑1 (MQ=255) cAAATTAATCCTCCTTACTTCCATTGACAATATAAG‑AAAATACTGACCCGGAATGTGCATCAGTCCAAGCATTGCATCAATCACATCATAAGGTATCAAAATTTTTCTAGTATCAAATAGAATCAAACGAACAGGAGTTACTACAACTg > 2:2181370/1‑149 (MQ=255) taatCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATa < 1:7671243/149‑1 (MQ=255) aatCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATaa < 1:10514478/149‑1 (MQ=255) atcatcCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATaaa > 1:1483203/1‑149 (MQ=255) atcatcCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATaaa > 1:7824068/1‑149 (MQ=255) tcatcCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATaaaa > 1:7994515/1‑149 (MQ=255) cTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatc > 1:6031308/1‑149 (MQ=255) ttACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatca < 1:7283478/149‑1 (MQ=255) tACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatcat > 1:9019755/1‑149 (MQ=255) aCTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatcatc > 2:11055052/1‑149 (MQ=255) aCTTCAATGGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatcatc < 2:177998/149‑1 (MQ=255) ttCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCTACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCAc > 1:1814585/1‑149 (MQ=255) ttCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCAc > 2:1936932/1‑149 (MQ=255) ccATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGa < 2:9194111/149‑1 (MQ=255) gATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGcc < 1:1640111/149‑1 (MQ=255) gATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGcc > 1:11255778/1‑149 (MQ=255) gATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGcc < 2:1525321/149‑1 (MQ=255) ataataTAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCt < 2:10280526/149‑1 (MQ=255) ataataTAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCt > 2:9769448/1‑149 (MQ=255) aataTAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCCTAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTg > 1:10000323/1‑149 (MQ=255) aataTAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCAAAGCATTGCATAAATCACATCATAAGTCAGCAAAATTTTTCCACTTTCAAATAACTTCAAACGAACAAGATTTACTAAAAATGGAATAAAAAAATCATCACGATAGCCTTg > 2:7487668/1‑149 (MQ=255) atatAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCGAAGCATTGCATCAAGCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGACTTACGCCAACTGGAATAAAAAAATCATCACGATAGCCTTGc < 2:7692270/149‑1 (MQ=255) tataAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGCt > 2:5761501/1‑149 (MQ=255) tataAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGCt < 1:9598885/149‑1 (MQ=255) | TTAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGAAAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGCTG > AM406671/2182906‑2183198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |