| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 894,627 | +G | coding (1044/1062 nt) | llmg_0924 → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 894,624 | 1 | . | G | 98.0% | 4491.6 / 61.0 | 1178 | coding (1041/1062 nt) | llmg_0924 | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (10/14); new base G (547/602); total (558/620) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 1254 total aligned reads displayed.
CAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑T‑G‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGTTTA > AM406671/894476‑894767 | aaGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑T‑g < 1:4415470/149‑1 (MQ=255) aGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑T‑g‑g < 2:6770446/149‑1 (MQ=255) aGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑T‑g‑g < 2:787670/149‑1 (MQ=255) gTAAATTAAATTCGAAGGATGTAACGATTAAAAAAACTACTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGAGGTAATAAGGAAGAAGAGG‑T‑T‑gag > 2:3391995/1‑147 (MQ=255) taaattaaatTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑T‑g‑g‑gg < 1:848728/149‑2 (MQ=255) aattaaattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑T‑g‑g‑ggaa < 2:10692543/149‑4 (MQ=255) taaattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑gaagaa > 2:7333277/1‑149 (MQ=255) aaattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑Gaagaag > 2:1254599/1‑149 (MQ=255) tCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTa < 1:3901634/149‑1 (MQ=255) cGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTaa < 1:1147915/149‑1 (MQ=255) cGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTaa < 1:1926892/149‑1 (MQ=255) aGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGAt > 1:1104417/1‑149 (MQ=255) gATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGAttt > 1:10002634/1‑149 (MQ=255) gATGTAAAGGTAAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGAttt < 2:1856552/149‑1 (MQ=255) gTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTaga < 1:9981488/149‑1 (MQ=255) aCGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTagaaaa > 2:9398700/1‑149 (MQ=255) ggTTAAAAAATCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTagaaaaag < 1:5369291/149‑1 (MQ=255) ggTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTagaaaaag < 2:1694814/149‑1 (MQ=255) ggTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTagaaaaag > 1:10587704/1‑149 (MQ=255) ttAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTagaaaaagaa > 1:3654017/1‑149 (MQ=255) tAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTagaaaaagaaa > 2:10334282/1‑149 (MQ=255) aaaaaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAAt > 1:2372702/1‑149 (MQ=255) aaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGa < 1:4240262/149‑1 (MQ=255) aCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGaa < 1:3055000/149‑1 (MQ=255) aCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTATTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGaa > 1:5954690/1‑149 (MQ=255) ctcggTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCCCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCC‑G‑G‑G‑GAAGAAGAGGGAGATTTAGAAAAAGAAGCGTTGAAAGCt > 2:3932888/4‑149 (MQ=255) tGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCa > 1:33847/1‑149 (MQ=255) ggTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCaa > 2:27876/1‑149 (MQ=255) ggTAAGAAAATTGGCTTATCTGGTTAGTCTTATTATTAATTCTTTTAGCTCTTTTCTTCGTATTCTTTATTTGATGGAAGAGACGTATAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGTAGAGTAAGATTTAGAAAAAGAATAATTGaaggagtaa > 2:8783471/1‑142 (MQ=255) aaTGAAAATTGGGTTATCGGGTTAGGCTTATTATTAATTATTTTCGTTCTTTTATTCTTATTGGTTCTTAAATGGAAGAGACGTAAAACGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTCAGAAAAAGCAACATTGACAGCTCAACt > 2:1449183/2‑149 (MQ=255) aTGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACtt > 2:3216499/1‑149 (MQ=255) aaaTTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAg > 1:7632202/1‑149 (MQ=255) aTTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCt < 1:5122191/149‑1 (MQ=255) aTTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCt > 1:9777874/1‑149 (MQ=255) ttGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTa < 2:1106478/149‑1 (MQ=255) ttATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATgaga < 2:5499853/149‑1 (MQ=255) aTCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGc < 2:10901737/149‑1 (MQ=255) aTCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGc > 1:10795224/1‑149 (MQ=255) tCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGca < 2:6067285/149‑1 (MQ=255) cTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGcac > 2:9588443/1‑149 (MQ=255) cTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGcac < 2:752303/149‑1 (MQ=255) tGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAACAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGcaca > 1:7134443/1‑149 (MQ=255) ggTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaa < 2:7740381/149‑1 (MQ=255) cTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAaataaata > 1:4587988/1‑149 (MQ=255) ttattattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAataaataa < 2:8585039/149‑1 (MQ=255) ttattattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAataaataa < 2:692880/149‑1 (MQ=255) tattattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAAtaaataaa > 2:4144936/1‑149 (MQ=255) attattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAg > 2:2439672/1‑149 (MQ=255) attattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAg > 2:10583079/1‑149 (MQ=255) ttattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGa < 1:5508738/149‑1 (MQ=255) tattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGat < 2:8445872/149‑1 (MQ=255) attaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGata > 1:9299515/1‑149 (MQ=255) aaTTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGataata < 1:9111281/149‑1 (MQ=255) ttCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATaataat > 1:10441202/1‑149 (MQ=255) tCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAAtt < 1:95115/149‑1 (MQ=255) tttAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTg > 1:2725979/1‑149 (MQ=255) ttAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGa < 2:4697718/149‑1 (MQ=255) gCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATgg > 2:2664104/1‑149 (MQ=255) tctTTTCTTCTTATTCTTTATTTTATGGAATAGACGTAAAAAGAAAGAATAGG‑T‑T‑G‑GTGTAGAAGTGTTATATTTAGAAATAGAAAAATTGAAAGCTCAATTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTTATgaga > 2:204016/1‑149 (MQ=255) tctTTTCTTCTTATTCGTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGa < 2:5770491/149‑1 (MQ=255) ttttCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACa < 2:9030420/149‑1 (MQ=255) ttcttcTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGa > 2:3556231/1‑149 (MQ=255) tcttctTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGat > 2:5678755/1‑149 (MQ=255) ttcttATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGatat > 1:10231213/1‑149 (MQ=255) ttcttATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGatat > 1:4851914/1‑149 (MQ=255) ttATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTa > 2:5197532/1‑149 (MQ=255) aTTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAgg < 1:8951744/149‑1 (MQ=255) ttCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGcac > 2:6283841/1‑106 (MQ=255) tCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGAt < 1:5724889/149‑1 (MQ=255) atatatattatCGAAGAGACATAAAAAAGAAGAAAAGG‑C‑TGG‑G‑GAAGAAGAGTAAGAAAAAAAAAAAAAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATc < 2:3779822/146‑1 (MQ=255) tattttatGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTAc > 1:2092325/1‑149 (MQ=255) ttttatGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACtt < 1:656777/149‑1 (MQ=255) ttatGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAg < 1:4707161/149‑1 (MQ=255) tatGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGa < 1:8735680/149‑1 (MQ=255) tatGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGa > 1:8335263/1‑149 (MQ=255) atGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAt > 2:4905228/1‑149 (MQ=255) tGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAtt > 2:298575/1‑149 (MQ=255) tGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAtt > 1:7431410/1‑149 (MQ=255) ggAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAttt < 1:2577106/149‑1 (MQ=255) ggAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAttt > 1:323524/1‑149 (MQ=255) ggAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAttt < 1:1471413/149‑1 (MQ=255) gAAGAGACGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAtttt > 2:5392184/1‑149 (MQ=255) aaGAGACGTAAAAAGGAAGAAGAGG‑C‑T‑GNG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTc > 1:6315608/1‑149 (MQ=255) gagaCGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTa < 2:443405/149‑1 (MQ=255) gagaCGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTa > 2:8068915/1‑149 (MQ=255) agaCGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTaa < 1:6152062/149‑1 (MQ=255) aCGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAAtt < 1:2877133/149‑1 (MQ=255) aCGTAAAAAGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAAtt > 1:8069669/1‑149 (MQ=255) aaaaaGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATAAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGa > 1:6944560/1‑149 (MQ=255) aaaaGGAAGAAGAGG‑CGG‑G‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAGAGCTCAAGTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGCTATACTTAGTTATTCTAAGTATGat > 2:984252/1‑149 (MQ=255) aaaaGGAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGat > 1:7829700/1‑149 (MQ=255) ggAAGAAGAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGattatt > 2:7106777/1‑149 (MQ=255) aagaagAGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTa > 2:11302154/1‑149 (MQ=255) gaagaGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACg < 1:4085573/149‑1 (MQ=255) gaagaGG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACg < 1:1780602/149‑1 (MQ=255) aagaGG‑C‑T‑G‑GATAATAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGTAGCTATGAGAGCACAGAGATCTACACATGAATATTCTGATTTGAGTGTTTTTTAGCCTCTACTCAGAATTTCCACTTGCGCTTATTTagtc < 2:2229950/149‑4 (MQ=255) agagG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGtt > 2:8306987/1‑149 (MQ=255) agagG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGtt < 2:6556822/149‑1 (MQ=255) agagG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGtt > 2:9708341/1‑149 (MQ=255) gagG‑C‑TGG‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGttt > 2:1320376/1‑149 (MQ=255) | CAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGG‑C‑T‑G‑G‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGTTTA > AM406671/894476‑894767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |