| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 549,527 | (T)6→7 | intergenic (‑197/‑190) | tnp905 ← / → tdk | transposase for insertion sequence element IS905B/Tdk protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 549,521 | 1 | . | T | 97.7% | 4697.6 / 68.3 | 1199 | intergenic (‑191/‑196) | tnp905/tdk | transposase for insertion sequence element IS905B/Tdk protein |
| Reads supporting (aligned to +/- strand): ref base . (9/18); new base T (559/611); total (569/630) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1324 total aligned reads displayed.
AACGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑TTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTTAAATAA > AM406671/549373‑549664 | aCGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑t > 1:4727360/1‑149 (MQ=255) ggATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttt < 1:2903411/149‑1 (MQ=255) aTTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttttt > 1:5798341/1‑149 (MQ=255) aTTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttttt < 1:7312770/149‑1 (MQ=255) tttATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑tttttt < 1:5592849/149‑1 (MQ=255) ttATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttttttt > 2:5939109/1‑148 (MQ=255) aTTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑tttttttga > 1:10846995/1‑146 (MQ=255) ccTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGt < 1:9490694/149‑1 (MQ=255) cTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTa > 2:8711567/1‑149 (MQ=255) ttttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGCTGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTAAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAg > 1:8800997/1‑149 (MQ=255) ttttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAg > 1:5378097/1‑149 (MQ=255) ttttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAg > 2:2912325/1‑149 (MQ=255) tttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAgg < 2:8030689/149‑1 (MQ=255) ttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGa > 1:4551824/1‑149 (MQ=255) tgtgTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGAt < 2:4033942/149‑1 (MQ=255) tACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAtc < 2:365833/149‑1 (MQ=255) tACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAtc < 2:128506/149‑1 (MQ=255) acaACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATctct > 2:6937420/1‑149 (MQ=255) cTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAg > 1:2129638/1‑149 (MQ=255) ttATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGa < 1:9051862/149‑1 (MQ=255) ttttACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAg > 1:9872477/1‑145 (MQ=255) ttttACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTc > 2:8388139/1‑149 (MQ=255) tttACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCg > 1:3286323/1‑149 (MQ=255) cTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGaa > 2:6797321/1‑149 (MQ=255) tACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTTTTTTTTTTTTAAAATATCTTAAGATTCGGTAGAAt > 2:9546985/1‑149 (MQ=255) tACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAAt > 1:401977/1‑149 (MQ=255) tACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAAt > 1:1060575/1‑149 (MQ=255) aGAAAAGATGATGAAAATTGAATTGAGTGAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTTAAGTAAGGATAAAATCTCTTACGATTCGGTAGAATCAggt > 2:6637104/1‑148 (MQ=255) aGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGa > 1:1802168/1‑149 (MQ=255) gAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGAt > 1:1483829/1‑149 (MQ=255) aaaaGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGTAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATg > 2:9894812/1‑149 (MQ=255) aaaaGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATg < 1:972706/149‑1 (MQ=255) aGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAgg > 1:4925482/1‑149 (MQ=255) gatgatGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTTAAGTAAGGATAATATCTCTTAATATTCGGTAGCATCAGGATGAgca > 2:5152754/1‑147 (MQ=255) gatgatGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGa > 1:235716/1‑149 (MQ=255) atgatgAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGaa > 1:7866118/1‑149 (MQ=255) atgatgAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGaa < 1:9620282/149‑1 (MQ=255) gatgaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGt < 2:5746098/149‑1 (MQ=255) atgaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGtt > 1:9389957/1‑149 (MQ=255) gaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGtttt > 1:2668164/1‑149 (MQ=255) aattgaattgAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTaa > 2:4429399/1‑149 (MQ=255) attgaattgaGTAAGAGTAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAg < 1:11234390/149‑1 (MQ=255) ttgaattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGt < 1:3754898/149‑1 (MQ=255) aattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTaaa > 1:4195331/1‑149 (MQ=255) tgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACt < 2:1926175/149‑1 (MQ=255) tAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCt > 2:3323315/1‑149 (MQ=255) agagGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTa > 2:9068405/1‑149 (MQ=255) gagGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTAc < 2:5445308/149‑1 (MQ=255) gagGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTAGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTAc > 2:7473328/1‑149 (MQ=255) agGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACt < 2:2051308/149‑1 (MQ=255) gAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTcc < 2:9325331/149‑1 (MQ=255) aaGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaa < 2:11143295/149‑1 (MQ=255) aaGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaa > 1:1024064/1‑149 (MQ=255) aGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaaa > 1:5913963/1‑149 (MQ=255) gCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAaat < 1:6203007/149‑1 (MQ=255) cTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAg > 2:11373867/1‑109 (MQ=255) gTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTTAAGTAATGATAAAATCTCTTAAGATTCTGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAtt < 2:6461077/149‑1 (MQ=255) gTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAtt < 2:7261100/149‑1 (MQ=255) gTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAtt < 2:2456172/149‑1 (MQ=255) tAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAttt < 2:10033353/149‑1 (MQ=255) aGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAtttt < 2:3930849/149‑1 (MQ=255) aGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAtttt > 1:1140244/1‑149 (MQ=255) aGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAtttt < 2:3166404/149‑1 (MQ=255) gTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAttttt < 2:10406429/149‑1 (MQ=255) tttAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATg > 1:7547490/1‑149 (MQ=255) tAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGa < 1:6924595/149‑1 (MQ=255) aGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGAt < 1:5076439/149‑1 (MQ=255) aTTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATaa > 1:7067482/1‑149 (MQ=255) tCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGTATaata > 2:10607809/1‑147 (MQ=255) tCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGa > 1:3149107/1‑149 (MQ=255) aTAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGAtt > 1:109921/1‑149 (MQ=255) tAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGAttt > 2:9716911/1‑149 (MQ=255) tAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATATCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTAATGGATAAGAttt > 2:4931810/1‑149 (MQ=255) aaCTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGAtttt < 1:440831/149‑1 (MQ=255) aCTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTtg > 1:3499215/1‑149 (MQ=255) aCTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTtg > 1:5165358/1‑149 (MQ=255) cTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTtgt > 1:3610259/1‑149 (MQ=255) tAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTtgtg < 1:2511113/149‑1 (MQ=255) gTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTTTTTTTTTTATAAAATATCTTAAGATTCGGTAGAATCAGGTTGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTTaa > 2:6205939/1‑149 (MQ=255) gTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGaa < 2:1648173/149‑1 (MQ=255) tttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAt < 1:6779160/149‑1 (MQ=255) ttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAtt < 1:8597076/149‑1 (MQ=255) aTTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTTTTGTTATGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCTAAATAATTTTTATGGATAAGATTTTGTGAATTTg > 2:89052/1‑149 (MQ=255) tCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGaa < 2:10250726/149‑1 (MQ=255) cAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGaaa > 1:8338153/1‑149 (MQ=255) aaagaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGAGAAGATTTTGTGAATTTGTAAGaa > 1:6492159/1‑149 (MQ=255) aagaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAat < 1:10011681/149‑1 (MQ=255) agaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAata < 2:10879336/149‑1 (MQ=255) ataAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATAttt < 2:3518475/149‑1 (MQ=255) taAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAANATTTTGTGAATTTGAAAGAATATATTTa < 1:6309097/149‑1 (MQ=255) tGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAt < 1:8074541/149‑1 (MQ=255) gAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCGTAAGATTCGGTAGAATCAGCATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCTAATAATTCTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAtt < 2:8218004/149‑1 (MQ=255) aaaaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAtttt < 2:4727266/149‑1 (MQ=255) aaaaTAGATGCCTTTTTTTGAAGTAAAGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGATGAAGTTTTTCAGTAAAAGTAGCTTACTCCAAATAATTGTTATGGATACGACTTTGTGAATTTGAAATAATATATTTAAGAAtttt > 2:7757467/1‑149 (MQ=255) aaaTAGATGCCTTTTTTTGAATTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAttttt > 2:226367/1‑149 (MQ=255) aaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTta < 1:10436126/149‑1 (MQ=255) aaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTta < 2:2691316/149‑1 (MQ=255) aTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaa < 2:4220632/149‑1 (MQ=255) tAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaa > 2:8542888/1‑149 (MQ=255) aGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaat > 2:1486537/1‑149 (MQ=255) | AACGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑TTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTTAAATAA > AM406671/549373‑549664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |