Predicted mutation
evidence seq id position mutation annotation gene description
RA AM406671 1,061,785 A→T I36N (ATT→AAT)  llmg_1101 ← putative secreted protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM4066711,061,7850AT99.6% 3754.0 / NA 983I36N (ATT→AAT) llmg_1101putative secreted protein
Reads supporting (aligned to +/- strand):  ref base A (1/3);  new base T (439/538);  total (441/542)
Fisher's exact test for biased strand distribution p-value = 6.32e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 987 total aligned reads displayed.

CTTTGTCAGCCAGAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAAATGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGATTCCAAGAAGAAGGACG  >  AM406671/1061639‑1061930
                                                                                                                                                  |                                                                                                                                                 
 tttGTCAGCCAGAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGt                                                                                                                                                <  2:6194179/149‑1 (MQ=255)
   tGTCAGCCAGAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTcc                                                                                                                                              <  1:1489919/149‑1 (MQ=255)
   tGTCAGCCAGAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTcc                                                                                                                                              <  1:3718141/149‑1 (MQ=255)
     tCAGCCAGAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTc                                                                                                                                            >  1:8603231/1‑149 (MQ=255)
     tCAGCCAGAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTc                                                                                                                                            >  1:4118234/1‑149 (MQ=255)
      cAGCCAGAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCa                                                                                                                                           >  1:4917480/1‑149 (MQ=255)
        gCCAGAAAGGTTTTTTTTTTTTTTTTTTCCGATGTTGAGCCGGCAGTAGTGATCGCTTTTACACCGGCGGTGGCTTGATTTGCTAATTGCTCGGCCTCTTGCTCAAGGAGTGTATTATTCGCTCCTAAAAGTAGAAAGTTGTCCTCact                                                                                                                                         >  2:7207762/1‑147 (MQ=255)
        gCCAGAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAAt                                                                                                                                         <  2:8567061/149‑1 (MQ=255)
            gAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTccc                                                                                                                                     <  1:10408270/149‑1 (MQ=255)
            gAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTccc                                                                                                                                     >  1:11063008/1‑149 (MQ=255)
               aGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGAc                                                                                                                                  >  1:10813411/1‑149 (MQ=255)
                 gTTTTTGCCTTTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCATTAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCCACTg                                                                                                                                >  2:2927722/1‑149 (MQ=255)
                   ttttGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGaa                                                                                                                              >  1:9548479/1‑149 (MQ=255)
                    tttttcATTTTACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGCTTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGaca                                                                                                                             >  2:3342978/6‑147 (MQ=255)
                      tGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAg                                                                                                                           >  1:8375716/1‑149 (MQ=255)
                      tGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAg                                                                                                                           <  2:8065862/149‑1 (MQ=255)
                        ccATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGtt                                                                                                                         <  2:8779803/149‑1 (MQ=255)
                        ccATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGtt                                                                                                                         >  2:11284555/1‑149 (MQ=255)
                          aTTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGc                                                                                                                       >  2:3149267/1‑149 (MQ=255)
                                 ttGCTGATGTTGAACTGTCAGTAGTCACNACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAGTTCCCGACTGAAAAGTTGCCGCAGaa                                                                                                                >  1:6387137/1‑149 (MQ=255)
                                 ttGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGaa                                                                                                                <  2:8467759/149‑1 (MQ=255)
                                  tGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAGAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAg                                                                                                               <  2:5837117/149‑1 (MQ=255)
                                  tGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAAtt                                                                                                                                        <  1:10009982/124‑1 (MQ=255)
                                     tGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGttt                                                                                                            <  2:10515734/149‑1 (MQ=255)
                                       aTGTTGAACTCTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGttttt                                                                                                          <  1:5136117/149‑1 (MQ=255)
                                        tGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTg                                                                                                         <  2:2221306/149‑1 (MQ=255)
                                           tGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAg                                                                                                      <  2:9370871/149‑1 (MQ=255)
                                               cTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGAt                                                                                                  <  2:5609571/149‑1 (MQ=255)
                                                tGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATc                                                                                                 <  1:898153/149‑1 (MQ=255)
                                                 gTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCa                                                                                                >  1:10582085/1‑149 (MQ=255)
                                                 gTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCa                                                                                                >  2:4692901/1‑149 (MQ=255)
                                                  tCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAg                                                                                               <  1:5837303/149‑1 (MQ=255)
                                                   cAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGt                                                                                              >  1:5665717/1‑149 (MQ=255)
                                                    agtagtCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTa                                                                                             >  1:10147816/1‑149 (MQ=255)
                                                     gtagtCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTaa                                                                                            >  1:4455370/1‑149 (MQ=255)
                                                      tagtCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTaaa                                                                                           <  2:7862320/149‑1 (MQ=255)
                                                          caccacAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAaaga                                                                                       >  1:734186/1‑149 (MQ=255)
                                                          caccacAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAaaga                                                                                       >  2:2583050/1‑149 (MQ=255)
                                                           accacAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAaagaa                                                                                      >  2:11195142/1‑149 (MQ=255)
                                                            ccacAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAaagaag                                                                                     <  1:7105206/149‑1 (MQ=255)
                                                            ccacAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAaagaag                                                                                     >  1:8171308/1‑149 (MQ=255)
                                                             cacaAATACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAaagaaga                                                                                    <  2:10826422/149‑1 (MQ=255)
                                                              acaAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAaagaagaa                                                                                   <  1:1139279/149‑1 (MQ=255)
                                                                aaaaaCACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGc                                                                                 <  1:1956216/149‑1 (MQ=255)
                                                                 aagacacCTGCTTTGGTTTGAGTTGCTAATTGATGGACATATTAAACAAGGAGTGTAAGATTCATTAATAAAAGTTGAAAATTGTCCTCAAAAAACGACTAAAAAGTTGCCGCAGAAGTTTTTGGAAAAAAAAAAAAAAAGAAGAAGCt                                                                                <  2:6372357/146‑1 (MQ=255)
                                                                  aaaCACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGACGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTa                                                                               >  1:1730076/1‑149 (MQ=255)
                                                                  aaaCACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTa                                                                               <  1:3149267/149‑1 (MQ=255)
                                                                    acacCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGACGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAg                                                                             >  2:4154922/1‑149 (MQ=255)
                                                                    acacCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAg                                                                             <  1:9110226/149‑1 (MQ=255)
                                                                    acacCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAg                                                                             >  2:7053064/1‑149 (MQ=255)
                                                                    acacCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAg                                                                             <  2:10609821/149‑1 (MQ=255)
                                                                     cacCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAgg                                                                            <  2:6628434/149‑1 (MQ=255)
                                                                      acCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGa                                                                           <  1:3522971/149‑1 (MQ=255)
                                                                        cTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGaaa                                                                         <  1:2099557/149‑1 (MQ=255)
                                                                        cTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGaaa                                                                         >  1:4266723/1‑149 (MQ=255)
                                                                         tGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACAGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGaaaa                                                                        <  2:11006949/149‑1 (MQ=255)
                                                                           cTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAAt                                                                      <  2:3921791/149‑1 (MQ=255)
                                                                             ttGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAg                                                                    <  1:8872564/149‑1 (MQ=255)
                                                                              tGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAgg                                                                   >  2:3798855/1‑149 (MQ=255)
                                                                               ggTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAggg                                                                  <  2:10351017/149‑1 (MQ=255)
                                                                                gTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTACTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGa                                                                 <  2:8180611/149‑1 (MQ=255)
                                                                                  ttGATTTGCTAATTGCTGGGACTCTTGCTCAAGGAGTGTAACAATAACACCGAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCAGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAAAAAAAAAAAAAAAATAGGGaaa                                                               <  2:6020384/149‑1 (MQ=255)
                                                                                   tGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGaaaa                                                              <  2:2417299/149‑1 (MQ=255)
                                                                                   tGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGAGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGaaaa                                                              >  2:9032592/1‑149 (MQ=255)
                                                                                    gATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAg                                                             <  1:9637518/149‑1 (MQ=255)
                                                                                      tttGCTAATTGCTGGGCCTCTTGCTCAAGGCGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGAt                                                           >  2:9798540/1‑149 (MQ=255)
                                                                                      tttGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGAt                                                           <  1:7555081/149‑1 (MQ=255)
                                                                                       ttGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATa                                                          >  1:2439480/1‑149 (MQ=255)
                                                                                       ttGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATa                                                          <  1:2865457/149‑1 (MQ=255)
                                                                                       ttGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATa                                                          <  1:9312233/149‑1 (MQ=255)
                                                                                           tAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGCAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAatta                                                      <  2:6834028/149‑1 (MQ=255)
                                                                                           tAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAatta                                                      <  2:1877730/149‑1 (MQ=255)
                                                                                           tAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAatta                                                      <  1:6068761/149‑1 (MQ=255)
                                                                                             aTTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAattatt                                                    <  1:9911084/149‑1 (MQ=255)
                                                                                                 cTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTAtttttt                                                <  1:776217/149‑1 (MQ=255)
                                                                                                   gggCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGCAAAGATAATTAtttttttt                                              >  2:10017049/1‑149 (MQ=255)
                                                                                                     gCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTtct                                            >  2:5211797/1‑149 (MQ=255)
                                                                                                      ccTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTtctc                                           >  2:5451162/1‑149 (MQ=255)
                                                                                                        tctTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAAGTATTTTTTTTCTCAt                                         <  2:9188819/149‑1 (MQ=255)
                                                                                                         ctTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATg                                        <  1:7980688/149‑1 (MQ=255)
                                                                                                           tGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGAt                                      <  1:2614414/149‑1 (MQ=255)
                                                                                                            gCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATa                                     >  1:6910399/1‑149 (MQ=255)
                                                                                                               cAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCa                                  >  2:7364949/1‑149 (MQ=255)
                                                                                                                   gAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATa                              >  2:9565561/1‑149 (MQ=255)
                                                                                                                   gAGTGTAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCAGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATa                              >  2:4518880/1‑149 (MQ=255)
                                                                                                                     gtgtAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATAcc                            <  2:4955349/149‑1 (MQ=255)
                                                                                                                      tgtAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTTTTTTGTTTTGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATAccc                           >  2:1700003/1‑149 (MQ=255)
                                                                                                                      tgtAACATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAaagaagaa                                                                                   >  2:1325675/1‑93 (MQ=255)
                                                                                                                         aaCATTCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCcac                        <  1:11217864/149‑1 (MQ=255)
                                                                                                                              tCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGa                   <  2:7510399/149‑1 (MQ=255)
                                                                                                                              tCACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGa                   <  1:1362958/149‑1 (MQ=255)
                                                                                                                               cACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGACGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGAt                  >  2:3606146/1‑149 (MQ=255)
                                                                                                                               cACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGAt                  <  1:6536759/149‑1 (MQ=255)
                                                                                                                               cACTCCTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGAt                  <  1:4693273/149‑1 (MQ=255)
                                                                                                                                   ccTAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACACCACAATGATTCCa              >  2:10163524/1‑149 (MQ=255)
                                                                                                                                     tAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGATTCCaag            >  1:8246749/1‑149 (MQ=255)
                                                                                                                                     tAAAAGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGATTCCaag            <  2:8655762/149‑1 (MQ=255)
                                                                                                                                         aGTTGAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGATTCCaagaaga        >  1:6615503/1‑149 (MQ=255)
                                                                                                                                           ttGAAAGTTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGAGCAGTAAAAAGAAGAAGCTGAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCTTGATAGCAGCTACCCCACAATGATGCCaagaagaag      >  1:5326381/1‑149 (MQ=255)
                                                                                                                                             gAAAATTGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGATTCCAAGAAGAAGGa    >  2:1533414/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                 
CTTTGTCAGCCAGAAAGGTTTTTGCCATTTGACTTGCTGATGTTGAACTGTCAGTAGTCACCACAAAAACACCTGCTTTGGTTTGATTTGCTAATTGCTGGGCCTCTTGCTCAAGGAGTGTAACATTCACTCCTAAAAGTTGAAAAATGTCCTCAATTCCCGACTGAAAAGTTGCCGCAGAAGTTTTTGGAGTGATCAGTAAAAAGAAGAAGCTAAGGAAAAATAGGGAAAAGATAATTATTTTTTTTCTCATGATAGCAGATACCCCACAATGATTCCAAGAAGAAGGACG  >  AM406671/1061639‑1061930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: