| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,572,256 | T→A | intergenic (+54/+183) | llmg_1598 → / ← deoD | putative secreted protein/DeoD protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,572,256 | 0 | T | A | 99.7% | 3732.5 / 0.5 | 945 | intergenic (+54/+183) | llmg_1598/deoD | putative secreted protein/DeoD protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (464/476); minor base . (0/3); total (465/480) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01 | |||||||||||
Only 100 of 980 total aligned reads displayed.
CTTGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAATAGAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTGAGA > AM406671/1572114‑1572399 | tGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCttt > 1:8634687/1‑149 (MQ=255) tGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCttt < 1:11348187/149‑1 (MQ=255) ggACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCtttt < 1:2831887/149‑1 (MQ=255) gACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTg < 1:1070584/149‑1 (MQ=255) aaaGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATa < 2:417656/149‑1 (MQ=255) ggTTGAACAGAAAGTGTTACCGTGCAATAAGACAAGGCTTCTGGTCAAATTACAAGTAAGTCTAAATTTAATGCAGAAGAAAGTTTACCGCATCGCAGAGAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGc < 2:8973636/149‑1 (MQ=255) gTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCt > 1:9072150/1‑149 (MQ=255) ttCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCtt > 2:308614/1‑149 (MQ=255) tCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCttt < 1:198148/149‑1 (MQ=255) tCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCttt < 1:9176038/149‑1 (MQ=255) cAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCtttt > 2:8592781/1‑149 (MQ=255) aGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTAt < 1:11023124/149‑1 (MQ=255) gAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTAtt > 2:10742198/1‑149 (MQ=255) gAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTAtt < 1:4457103/149‑1 (MQ=255) gtgtTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTACATCTAAATTTAATGCATAAGAAACTGTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGGTTTTTTAttttga > 1:778737/1‑147 (MQ=255) tgtTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTTTTTTCAg > 2:6492641/1‑149 (MQ=255) tttACCGTTCAATACGACAAAGATTCTGGTAAAATTAAAAGTAAATCTAAATTTAATGAATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATATAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGa < 2:4885881/148‑1 (MQ=255) gtTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGa < 1:5116294/149‑1 (MQ=255) attaaagTTCAATACGACAAAGATTCTAGTAAAATTACAAGTAAATATAAATTTAATACATAAAAAAATTTACCTCATATATGAAAAGATGGAAGGAAAGTTTATATAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGa < 2:11081773/143‑1 (MQ=255) ttACCGTGCAATAAGACAAAGCTTAGAGTCAAATGACAAGTAAAACAAAAACTAATACAAAAGAAAATTTACAAAATCTCTAAAAAGGTGGAAAAAAAGTTTAAATAAAAT‑AAAAAAAAGCGTTTGAATAAGCTTTTTTATTTTCAGaa < 2:113175/149‑1 (MQ=255) ttAACGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGaa < 2:10932472/149‑1 (MQ=255) ccGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATa < 1:10447920/149‑1 (MQ=255) cGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATaa < 1:742234/149‑1 (MQ=255) ttCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATACGCTTTTTTATATTCAGAAATaaaa > 1:876901/1‑147 (MQ=255) tCACTACGACAAAGCTTCTGGTCAAATTAAAAATGAATCAAAATTTAATGCATAAAAAAACGTACCTGATCTCTAAAAGGATTGAATGAAAGGTAACCTAAACG‑AAAAAAAAGCGTTTGCATATCCTTTTTTATTTTCATCAATAACag < 2:6271183/149‑1 (MQ=255) aaTACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAACAT‑AAAAAAAAGCTATTGAATAAGCTTTTTTATTTTCAGAAATAACagaa > 2:9711506/1‑149 (MQ=255) tACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACagaaga < 1:250744/149‑1 (MQ=255) tACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACagaaga > 1:2217032/1‑149 (MQ=255) aCGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGAt > 2:7539707/1‑149 (MQ=255) aCGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGAt < 2:4615312/149‑1 (MQ=255) aCAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGa > 2:4341819/1‑149 (MQ=255) aCAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTACTTTCAGAAATAACAGAATATGGa > 1:6506703/1‑149 (MQ=255) cAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGaa > 2:10520947/1‑149 (MQ=255) cAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGaa < 1:7549899/149‑1 (MQ=255) cAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGaa < 1:1528867/149‑1 (MQ=255) aaaGCATTTAGTCAAATTAGAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGaaa < 2:5579949/149‑1 (MQ=255) cTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAActc > 2:2474909/1‑149 (MQ=255) ttCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAActct < 1:5409815/149‑1 (MQ=255) ttCGGGTCAAATTACAAGTAAATCTAAAATTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAActct < 1:480385/149‑1 (MQ=255) taaaaTTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAACCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCtaat < 2:8240202/147‑1 (MQ=255) tCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCtaat > 1:10284309/1‑149 (MQ=255) tCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCtaat > 1:989271/1‑149 (MQ=255) cAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCtaatt > 2:7290986/1‑148 (MQ=255) aaaTTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCtaataa < 1:11248778/149‑1 (MQ=255) aaTTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATaaa > 2:9525246/1‑149 (MQ=255) tACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATa > 2:2185018/1‑149 (MQ=255) aCAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTAAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATaa > 1:10020880/1‑148 (MQ=255) cAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATgg < 1:8966918/127‑1 (MQ=255) aaGAAAATCTAAATATAAAGCATAAGAAACTTTACCTCATCACAGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGaa < 2:3338927/149‑1 (MQ=255) gTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTGCTAATAAAATAGAACt < 1:2643217/149‑1 (MQ=255) gTAAATCTAAATTTAATGCATAAGAAACTTTACCACATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACt < 1:3857629/149‑1 (MQ=255) aaTCTAAATTTAATACATAAGAAACTTTACCTCAACACTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATCGAAAACTCTTCTAATAAAATAGAACTTGa < 2:7056676/149‑1 (MQ=255) cTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTg > 1:9516759/1‑149 (MQ=255) cTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTg < 1:5820273/149‑1 (MQ=255) aaaaTATAATGCATAAGAAACTTTACCTCAGCTCTGAAAAGATGGAAGAAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGa < 2:8431851/148‑1 (MQ=255) aaaTTTAATGCATAAGAAACTTTACCTAATCTCTGAAAAGATGGAAGGAAAGAGTATCTAAAAT‑AAAAAAAAGCATTTGAATAAGCATTTTTATTTTCAGAAATAAAAGAAGATTGAAAATTTTTCTATTTAAATAGAATTtgattgat > 2:5989998/1‑149 (MQ=255) aTTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTGTCTAAAAT‑AAAAAAAAGCTGTTGAATAAGCTTTTTTATTTTCAGAAATTACAGAAGATGGAAAACTATTCTAATCAACTAGAACGTGAGTGATaa > 1:672981/1‑149 (MQ=255) tttAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaa > 2:6835026/1‑149 (MQ=255) tttAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaa > 2:2022586/1‑149 (MQ=255) ttAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaaa > 1:10824556/1‑149 (MQ=255) aaTGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGCAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaaaaa > 2:5811650/1‑149 (MQ=255) aaTGCAGAAAAAACTTTACCTCATAACTTAAAAGATGGAAGGAAATTTTATATAAAAA‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaaaaa < 2:8800153/149‑1 (MQ=255) aTAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGAc < 2:7817810/149‑1 (MQ=255) tAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGAcc > 2:1801926/1‑149 (MQ=255) tAAGAAACTTTACCTCATCTCTGAAAAGAGGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGATGTTGAATAAGCTTTTTTATTTTTAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTCGATAGATAAAAGATatccc > 2:8001228/1‑145 (MQ=255) aaGAAACATTACCTCATCTGTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCt < 1:5604349/149‑1 (MQ=255) aGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCt < 1:4046321/149‑1 (MQ=255) aaaaCTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTc < 2:3789761/148‑1 (MQ=255) aaaCTTTACCTCAACTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCt < 1:802132/149‑1 (MQ=255) ttACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATACAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAgg > 1:7000159/1‑149 (MQ=255) aCCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTc < 1:3630874/149‑1 (MQ=255) aCCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTc < 1:8171391/149‑1 (MQ=255) tCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGATTGATAAAAAATAGACCTTCTAAAGGCCTAt > 2:10336043/1‑149 (MQ=255) tCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAt < 1:10153115/149‑1 (MQ=255) ctctGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATGACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttttt > 1:7234068/1‑149 (MQ=255) gAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttttttttt < 1:1054380/149‑1 (MQ=255) aaaaGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAtttttttttt > 2:10096464/1‑149 (MQ=255) aGATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACCCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAg < 1:6218682/149‑1 (MQ=255) gATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGa < 1:1358448/149‑1 (MQ=255) gATGGAAGGAAAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGa > 2:153373/1‑149 (MQ=255) tGGAAGGAAAGTATATCTAAAAT‑AAAAAAAAGTTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGaaa < 1:2361109/149‑1 (MQ=255) tGGAAAGAAAATTTATATAAAAT‑AAAAAAAATCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGaaa < 2:6139794/149‑1 (MQ=255) agaaaagaaAGTTTATAAAAAAT‑AAAAAAAAGCTTTTGAATAAGCTGTTTTATTTTCAGAAAGAACAGAAGATGGAAAACTCTGCTAATAAAATATAACTTGAGTGATAAAAAATCGACCTTCTAAAGGTCTATTTTTTTTTTAAGaaa < 2:3972857/143‑1 (MQ=255) gaaggaaAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACa > 1:4210028/1‑149 (MQ=255) gaaggaaAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACa < 1:6063292/149‑1 (MQ=255) aaggaaAGTTTATCTAAAAT‑AAAAAAGAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCNAAAGGTCTATTTTTTTTTTAAGAAACAg < 1:6356248/149‑1 (MQ=255) ggaaAGTTTATCTAAAAT‑AAAAAAAAGCTTGTGAATAAGCTTTTTTATTTTTAGAAATAACAGAAGATGGAAAAATCTTGTAATAAAATAGAACTGGAGTGATAAAAAATAGACCTTCTCAAGGTCTATTTTTTTTTTAAGAAACAGaa > 2:2804123/1‑149 (MQ=255) gaaAGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGaaa < 1:3014561/149‑1 (MQ=255) aaGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAAtt < 1:9337343/149‑1 (MQ=255) aGTTTATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAAttt > 2:5442374/1‑149 (MQ=255) aGTTTAACAAAAAG‑AAAAAAAAGCGTTTGAATAAGATTTATGAGTTTAAGAAAAAACACAATATGGAAAACACTACTAATAAAATATAACTTGAGTGATAAAAAATAGACCTGCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAAttt < 2:9282035/149‑1 (MQ=255) tATCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAatttattt > 2:5070147/1‑149 (MQ=255) tCTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAg > 2:1309161/1‑149 (MQ=255) cTAAAAT‑AAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGa > 1:8419962/1‑149 (MQ=255) taaaat‑aaaaAAAAGCTATTGAAAAAGCTTTTTTATTTTAAGAAATAACAGAAGATGGAAAAATCTTATATTAGAATAGAACTTGACGGATTATAAATTGACTTTCCAAAGGTCTATTTTTTTCGTTAGAAACAGAAATTAACATAGaa > 2:3497330/1‑148 (MQ=255) aaaat‑aaaaaAAAGCTTTTGAATAAGCTTTTTTATTTTCAGCAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGttt > 1:1794062/1‑149 (MQ=255) aaaat‑aaaaaAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGAtt > 1:4885937/1‑149 (MQ=255) aaat‑aaaaaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTg > 1:3468021/1‑149 (MQ=255) aat‑aaaaaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTga > 1:9727009/1‑149 (MQ=255) aat‑aaaaaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTga > 1:3261909/1‑149 (MQ=255) | CTTGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AAAATAGAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTGAGA > AM406671/1572114‑1572399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |