| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,731,090 | T→C | G335G (GGA→GGG) | llmg_1749 ← | putative membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,731,090 | 0 | T | C | 99.7% | 4773.6 / NA | 1141 | G335G (GGA→GGG) | llmg_1749 | putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (562/575); minor base G (3/0); total (565/576) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1170 total aligned reads displayed.
AATCAGTAAAATTAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAATCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCTTGCCCAATTGAAATTC > AM406671/1730944‑1731235 | aTCAGTAAAATTAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCa > 2:4809591/1‑149 (MQ=255) cAGTAAAATTAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAg < 1:8892437/149‑1 (MQ=255) aGTAAAATTAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGa > 2:6400868/1‑149 (MQ=255) gTAAAATTAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGAt < 1:2658387/149‑1 (MQ=255) aaaaTTAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTTTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTa < 1:6962596/149‑1 (MQ=255) aaaaTTAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTa < 1:3866548/149‑1 (MQ=255) aaaTTAATAGGATCAAGAGTGCATTCATAAAGAACTCTACTTTACTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGTGGTAATTGGCACAGCTAACACGATTACAATGGCCGAAATAATCGTCTGTAATAACCCAAGATTaa > 2:5553984/1‑149 (MQ=255) aaTTAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAg > 1:4158712/1‑149 (MQ=255) ttAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGAc < 2:8009286/149‑1 (MQ=255) tAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGAcc < 2:8190888/149‑1 (MQ=255) aTAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCaa < 2:5255307/149‑1 (MQ=255) aTCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGtt > 2:4194266/1‑149 (MQ=255) tCAAGAGTGCATTCATAAAGAACTCTCCNTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTg > 1:6298805/1‑149 (MQ=255) cAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATAAAGACCAACAGTTGc > 2:7545210/1‑149 (MQ=255) aaGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCa < 1:871946/149‑1 (MQ=255) agTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAata < 2:195974/149‑1 (MQ=255) agTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAata > 1:3290905/1‑149 (MQ=255) gCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATaa > 2:2492617/1‑149 (MQ=255) ccATTCATAAGGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCAGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATaa < 2:619352/148‑1 (MQ=255) cATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAg < 1:1568033/149‑1 (MQ=255) cATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAg > 2:918092/1‑149 (MQ=255) aTTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGa > 2:10029090/1‑149 (MQ=255) aTTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGa < 1:646116/149‑1 (MQ=255) cATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCa > 2:9542598/1‑149 (MQ=255) aaGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGaa < 1:7056472/149‑1 (MQ=255) aGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAAt < 2:2959009/149‑1 (MQ=255) gAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAAtt > 1:9648587/1‑149 (MQ=255) aaCTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAAttt > 1:8198635/1‑149 (MQ=255) aCTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTc > 1:10618984/1‑149 (MQ=255) ctctCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTcc < 2:4513200/149‑1 (MQ=255) ctctCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTcc < 1:10172776/149‑1 (MQ=255) tctcCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCa < 1:1111706/149‑1 (MQ=255) tcctttccttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCAtt > 2:116058/1‑149 (MQ=255) cctttccttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCAttt < 1:2005423/149‑1 (MQ=255) cctttccttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCAttt < 1:9413655/149‑1 (MQ=255) tttccttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTtct < 2:10314934/149‑1 (MQ=255) tttccttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTACAATATAAGACCAAGAATATCCATTtct > 1:3688341/1‑149 (MQ=255) tccttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCa < 2:6700992/149‑1 (MQ=255) ccttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCaa < 2:9708247/149‑1 (MQ=255) ccttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCaa > 1:3437001/1‑149 (MQ=255) cttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCaat < 1:239787/149‑1 (MQ=255) cttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCaat < 2:11216224/149‑1 (MQ=255) cttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCaat > 2:10891581/1‑149 (MQ=255) ttGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCaata > 1:5851951/1‑149 (MQ=255) tgatgaTTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCaataa < 2:5772641/149‑1 (MQ=255) tgatgaTTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCaataa > 1:4817756/1‑149 (MQ=255) gatgatTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCaataat < 1:8325173/149‑1 (MQ=255) atgatTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAataata > 2:6974675/1‑149 (MQ=255) tgatTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAGCCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAAtaataa < 1:6727176/149‑1 (MQ=255) gatTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATaaa > 2:1576509/1‑149 (MQ=255) gatTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATaaa > 1:8024271/1‑149 (MQ=255) gatTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATaaa > 1:1155579/1‑149 (MQ=255) ttCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGc < 2:10786564/149‑1 (MQ=255) ttCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGc > 2:7723970/1‑149 (MQ=255) tCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCg > 2:3420855/1‑149 (MQ=255) tCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCg < 1:7785597/149‑1 (MQ=255) gCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCaa > 1:11255122/1‑149 (MQ=255) aaaCTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGt < 1:7672186/149‑1 (MQ=255) tgAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGcc < 1:4436266/149‑1 (MQ=255) aaaaCAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCAt > 1:4702006/1‑149 (MQ=255) aaaCAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATg > 2:4911230/1‑149 (MQ=255) aaCAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGa > 1:2882060/1‑149 (MQ=255) aCAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGaa > 1:5112629/1‑149 (MQ=255) aCAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGaa > 2:8481134/1‑149 (MQ=255) cAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGaaa > 2:3908350/1‑149 (MQ=255) cAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGaaa > 1:3047641/1‑149 (MQ=255) aGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGaaaa > 1:1371960/1‑149 (MQ=255) gCGGTAATTGGCACAGCTAACACGATGCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTTTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAAt < 1:7332005/149‑1 (MQ=255) tAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATg < 2:538855/149‑1 (MQ=255) aaTTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATACTAAAAGCGTCATCGGCCAAGTTTCCGCCATGACCATCATGa > 1:1047028/1‑149 (MQ=255) ttGGCACAGCTAACACGATTCCAAAGGCCGAAATAAACGTTTGGAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTGCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCTACCATGAAATTCATGaaa > 2:3673313/1‑148 (MQ=255) gCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACaaa < 2:11109790/149‑1 (MQ=255) caGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACa > 1:2817011/1‑149 (MQ=255) aGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACAt > 1:2183107/1‑149 (MQ=255) gCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACAtt > 2:3270280/1‑149 (MQ=255) gCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACAtt < 1:9138068/149‑1 (MQ=255) cTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACAttt < 2:6870932/149‑1 (MQ=255) cTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACAttt < 2:8923779/149‑1 (MQ=255) tAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTg < 1:9811766/149‑1 (MQ=255) acacGATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTc < 1:10836167/149‑1 (MQ=255) gATTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAg < 1:7576568/149‑1 (MQ=255) aTTCCAATGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGt < 1:8534884/149‑1 (MQ=255) aaTGGCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCaa > 2:1742430/1‑149 (MQ=255) gCCGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAg > 2:2707492/1‑149 (MQ=255) ccGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAgg > 2:46460/1‑148 (MQ=255) cGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGct < 1:1035112/149‑1 (MQ=255) cGAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGct < 2:10496338/149‑1 (MQ=255) cGAAATAATCGTATGTAATAACACAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTATCCGCCATGAAAATCAGGAACGAAACATTTGTCAAAGTTCCAATGAGct < 2:2210436/149‑1 (MQ=255) gAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGctc > 2:10173648/1‑149 (MQ=255) gAAATAATCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGctc < 2:1371960/149‑1 (MQ=255) aataatCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCtt < 1:6027104/149‑1 (MQ=255) aataatCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCtt > 1:10021888/1‑149 (MQ=255) aataatCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCtt > 2:5082719/1‑149 (MQ=255) aatCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCTTGcc < 1:5286004/149‑1 (MQ=255) aatCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCTTGcc < 1:1857396/149‑1 (MQ=255) tCGTTTGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCTTGCCCa < 2:7350076/149‑1 (MQ=255) ttGTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAAGAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCTTGCCCAATTg > 1:6842690/1‑149 (MQ=255) gTAATAACCCAAGATTAAGACCAACCGTTGCAATATAAGACCAATAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGATCTTGACAAATTGaa < 2:9378979/149‑1 (MQ=255) aataacCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCTTGCCCAATTGAAAt < 2:8653721/149‑1 (MQ=255) ataacCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCTTGCCCAATTGAAAtt > 1:5555309/1‑149 (MQ=255) | AATCAGTAAAATTAATAGGATCAAGAGTGCATTCATAAAGAACTCTCCTTTCCTTGATGATTTCTAGTCAAAGCAAAACTTGTGAAAACAGCGGTAATTGGCACAGCTAACACGATTCCAATGGCCGAAATAATCGTTTGTAATAATCCAAGATTAAGACCAACCGTTGCAATATAAGACCAAGAATTTCCATTTCTCAATAATAAAAGCGTCATCGGCAAAGTTTCCGCCATGAAAATCATGAACAAAACATTTGTCAAAGTTCCAATGAGCTCTTGCCCAATTGAAATTC > AM406671/1730944‑1731235 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |