| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 2,122,554 | G→A | S58L (TCG→TTG) | cfa ← | cyclopropane‑fatty‑acyl‑phospholipid synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 2,122,554 | 0 | G | A | 99.6% | 5257.7 / NA | 1373 | S58L (TCG→TTG) | cfa | cyclopropane‑fatty‑acyl‑phospholipid synthase |
| Reads supporting (aligned to +/- strand): ref base G (0/2); major base A (661/705); minor base C (5/0); total (666/707) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.68e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1373 total aligned reads displayed.
GATTTCCCAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCGAGGCTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCTTT > AM406671/2122408‑2122699 | gATTTCCCAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAACAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAg > 2:1218685/1‑149 (MQ=255) aTTTCCCAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAgg > 1:7353526/1‑149 (MQ=255) tCCCAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAggttg > 2:11046056/1‑146 (MQ=255) tCCCAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTg < 1:1542653/149‑1 (MQ=255) tCCCAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTg > 2:9156194/1‑149 (MQ=255) ccAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGc < 2:3632308/149‑1 (MQ=255) cAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCa > 1:9692859/1‑149 (MQ=255) aaaaGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAATCCTCAGCTAATACCAAGGTTGGCAt < 2:6202587/149‑1 (MQ=255) aGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATtga > 1:4154679/1‑149 (MQ=255) gTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATtgat > 1:11033226/1‑149 (MQ=255) tttGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATtgatg < 2:3816098/149‑1 (MQ=255) ttGAGCATTAATTTACCAAAGCCAGATTTGTCAGTTAAAAAACTGTCCGCTTTTCGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCGTCAGCTAATAGCAAGGTTGGCATtgatga > 2:6680791/1‑149 (MQ=255) ttGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTCAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATtgatga < 1:7738977/149‑1 (MQ=255) ttGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATtgatga > 2:596209/1‑149 (MQ=255) aGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATaa > 1:7909079/1‑149 (MQ=255) aGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATaa > 1:1432049/1‑149 (MQ=255) gCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATaaa < 2:3396683/149‑1 (MQ=255) aTTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATc > 2:8943716/1‑149 (MQ=255) tACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAAt < 1:10725237/149‑1 (MQ=255) tACCAAAGCCAGACTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATCTAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAAt < 1:6246169/149‑1 (MQ=255) ccAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATga < 2:5480574/149‑1 (MQ=255) cAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATgag > 1:11249791/1‑149 (MQ=255) cAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATgag < 1:10424815/149‑1 (MQ=255) aGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAAt > 1:2373723/1‑149 (MQ=255) cAGATCGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAAtttt < 1:6485886/149‑1 (MQ=255) aTTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTa < 1:8739265/149‑1 (MQ=255) aTTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTa < 2:9385788/149‑1 (MQ=255) ggTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTg > 1:1156543/1‑149 (MQ=255) tCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGaa < 1:3101642/149‑1 (MQ=255) ttAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATGTTTTATTGAAAGTg > 2:10718098/1‑149 (MQ=255) tAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGa < 2:1969211/149‑1 (MQ=255) tAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGa < 2:4364129/149‑1 (MQ=255) aaaaCTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGAtgt < 1:7495997/149‑1 (MQ=255) aaaCTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGAtgtg > 1:1929188/1‑149 (MQ=255) aaCTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGa < 2:8113318/149‑1 (MQ=255) aCTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGaa > 2:1729277/1‑149 (MQ=255) gTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCt > 2:308840/1‑149 (MQ=255) tCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTg < 2:408054/149‑1 (MQ=255) tCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTg > 1:3299076/1‑149 (MQ=255) ccGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGa > 2:7531804/1‑149 (MQ=255) ccGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGa > 2:5723505/1‑149 (MQ=255) ccGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGa < 2:7737753/149‑1 (MQ=255) gCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGt < 2:5268029/149‑1 (MQ=255) tACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTtct > 2:4544310/1‑149 (MQ=255) aCGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTtctc > 1:3457911/1‑149 (MQ=255) tAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTc > 1:4609908/1‑149 (MQ=255) tAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTc < 2:2215191/149‑1 (MQ=255) tAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTc > 1:490909/1‑149 (MQ=255) aaGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCa < 2:1482573/149‑1 (MQ=255) aGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCAc < 2:8468309/149‑1 (MQ=255) aGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCAc > 1:7129035/1‑149 (MQ=255) aGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCATCAc < 2:4961735/149‑1 (MQ=255) aTGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATAc < 1:929417/149‑1 (MQ=255) caacaaGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACttt > 1:3996560/1‑149 (MQ=255) acaaGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTc < 1:2978595/149‑1 (MQ=255) aaGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTg > 2:10528342/1‑149 (MQ=255) gCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGtt < 1:9837632/149‑1 (MQ=255) gCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGtt > 1:9557392/1‑149 (MQ=255) ctctTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGttt < 2:4663382/149‑1 (MQ=255) ctctTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGttt > 1:8070759/1‑149 (MQ=255) tctTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGtttt < 2:10075689/149‑1 (MQ=255) ttGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTc < 1:2656286/149‑1 (MQ=255) ttGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTc > 1:5851282/1‑149 (MQ=255) gATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCAt < 1:4485066/149‑1 (MQ=255) gATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCAt < 2:7939785/149‑1 (MQ=255) aTACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATc > 2:7343704/1‑149 (MQ=255) tACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATcc < 1:4347905/149‑1 (MQ=255) cccTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAACTGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAAt < 1:6973901/149‑1 (MQ=255) tCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGGATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGt < 1:360059/149‑1 (MQ=255) tCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGt < 1:2165259/149‑1 (MQ=255) tCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGt < 1:6051024/149‑1 (MQ=255) cAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTc > 2:6531388/1‑149 (MQ=255) aTCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCAc > 2:2442869/1‑149 (MQ=255) ctcAATTTCTTCATTCATATAAGCCTCAGCTAATACCAATGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTTTTTTTCCATCCCAATAAGTCACTg < 2:2816235/149‑1 (MQ=255) cAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTGTTTCCATCCCACTAAGTCACTGCa > 2:1032312/1‑149 (MQ=255) cAATTTCTTCATTCATATAAGCCTCAGATAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTGTTCTGTTTTTCCATCCCAATAAGTCACGGCa < 2:8781805/149‑1 (MQ=255) aaTTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCaa < 2:9851152/149‑1 (MQ=255) aaTTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCaa > 1:9419277/1‑149 (MQ=255) tttCTTCATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATg < 1:8947538/149‑1 (MQ=255) tcttcATTCATATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATggg > 2:2638941/1‑149 (MQ=255) ttcattcaTATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGa > 1:9168523/1‑149 (MQ=255) catATAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGa < 1:5477591/149‑1 (MQ=255) atatAAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGaa < 1:8348350/149‑1 (MQ=255) tataAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGaaa > 1:8572435/1‑149 (MQ=255) ataAGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAg < 1:3808480/149‑1 (MQ=255) taAGCCTCAGCTAATACCACGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGc < 1:5616583/149‑1 (MQ=255) aGCCTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCaa < 1:2838994/149‑1 (MQ=255) cTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCATCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTg < 1:6703532/149‑1 (MQ=255) cTCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTg > 2:3285534/1‑149 (MQ=255) tCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGGATTTTTTGTTGAAAGTGATGTGAACCTGAGTTTCTCCTTCAGCATACTTTTCTGTTTTTGCAGCCCAATAAGTCACTGCAATGGGGGTATCGAAAGCAACtcc > 2:8265611/1‑147 (MQ=255) tCAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGc < 1:1695530/149‑1 (MQ=255) cAGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCg > 2:6900146/1‑137 (MQ=255) aGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCaa < 1:5075577/149‑1 (MQ=255) aGCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGACTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCaa > 2:7138732/1‑149 (MQ=255) gCTAATACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAg < 2:11215884/149‑1 (MQ=255) aTACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCt > 1:5316391/1‑149 (MQ=255) aTACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCt < 2:9602057/149‑1 (MQ=255) aTACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTGCCCTCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCt < 2:10841042/149‑1 (MQ=255) tACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCtt < 1:10238724/149‑1 (MQ=255) tACCAAGGTTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCtt > 1:10018344/1‑149 (MQ=255) | GATTTCCCAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCGAGGCTGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCTTT > AM406671/2122408‑2122699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |