mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 45 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM406671 | 1333548 = | NA (NA) | 148 (0.120) | 71/270 | 13.5 | 14.2% | intergenic (‑831/+481) | llmg_1358/llmg_1359 | conserved hypothetical protein/conserved hypothetical protein |
| ? | AM406671 | = 1380520 | 977 (0.750) | intergenic (‑457/+79) | llmg_1411/guaC | hypothetical protein/GMP reductase | |||||
| * | ? | AM406671 | = 1321046 | 811 (0.620) | 56 (0.050) | 46/248 | 16.7 | 7.0% | intergenic (‑192/+485) | xpt/llmg_1347 | xanthine phosphoribosyltransferase/hypothetical protein |
| ? | AM406671 | 1380521 = | 803 (0.730) | intergenic (‑458/+78) | llmg_1411/guaC | hypothetical protein/GMP reductase | |||||
| * | ? | AM406671 | = 2143826 | 1214 (0.970) | 213 (0.170) +TTTTTTTTT |
47/266 | 17.3 | 15.2% | pseudogene (144/675 nt) | tnp1077 | pseudogene |
| ? | AM406671 | 2143827 = | 1265 (0.960) | pseudogene (143/675 nt) | tnp1077 | pseudogene | |||||
| * | ? | AM406671 | = 239083 | 1547 (1.180) | 39 (0.040) +38 bp |
30/220 | 19.2 | 3.3% | coding (425/813 nt) | llmg_0252 | conserved hypothetical protein |
| ? | AM406671 | 239122 = | 1498 (1.140) | coding (464/813 nt) | llmg_0252 | conserved hypothetical protein | |||||
| * | ? | AM406671 | 778852 = | 1250 (0.950) | 124 (0.160) +62 bp |
14/172 | 22.0 | 14.3% | intergenic (+11/+180) | rbsB/ps301 | ribose ABC transporter substrate binding protein RbsB/putative integrase |
| ? | AM406671 | 2063454 = | 1320 (1.010) | intergenic (‑244/+964) | sunL/ps461 | Ribosomal RNA small subunit methyltransferase B/bacteriophage lysin | |||||
| * | ? | AM406671 | = 85061 | NA (NA) | 33 (0.030) +AAAAAAAATCCAAGTATT |
25/260 | 22.4 | 2.6% | pseudogene (726/729 nt) | tnp1077 | pseudogene |
| ? | AM406671 | 600973 = | 1417 (1.080) | intergenic (+14/‑58) | tnp1077/llmg_0612 | pseudogene/conserved hypothetical protein | |||||
| * | ? | AM406671 | 778852 = | 1250 (0.950) | 29 (0.020) | 26/270 | 22.5 | 2.5% | intergenic (+11/+180) | rbsB/ps301 | ribose ABC transporter substrate binding protein RbsB/putative integrase |
| ? | AM406671 | = 820924 | 1120 (0.940) | intergenic (+251/‑254) | ps358/llmg_0854 | conserved hypothetical protein/hypothetical protein predicted by Glimmer/Critica | |||||
| * | ? | AM406671 | = 2520063 | 1585 (1.210) | 21 (0.020) +28 bp |
19/240 | 23.6 | 1.6% | coding (753/1305 nt) | dacA | DacA protein |
| ? | AM406671 | 2520092 = | 1598 (1.220) | coding (782/1305 nt) | dacA | DacA protein | |||||
| * | ? | AM406671 | = 2410715 | 1521 (1.160) | 20 (0.020) | 19/260 | 24.4 | 1.4% | intergenic (‑313/+165) | llmg_2458/llmg_2459 | putative fibronectin‑binding protein/conserved hypothetical protein |
| ? | AM406671 | 2411162 = | 1417 (1.230) | intergenic (‑34/+39) | llmg_2459/llmg_2460 | conserved hypothetical protein/conserved hypothetical protein | |||||
| * | ? | AM406671 | 1336332 = | 669 (0.510) | 198 (0.160) | 16/288 | 26.7 | 23.5% | intergenic (‑167/+816) | llmg_1362/llmg_1364 | hypothetical protein/hypothetical protein |
| ? | AM406671 | = 1336703 | 639 (0.500) | intergenic (‑538/+445) | llmg_1362/llmg_1364 | hypothetical protein/hypothetical protein | |||||