| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 674,848 | Δ1 bp | intergenic (+56/‑28) | llmg_0683 → / → llmg_pseudo_19 | putative transposase helper protein for IS712B/pseudogene |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 674,847 | 0 | A | . | 99.3% | 3308.6 / 10.2 | 747 | intergenic (+55/‑29) | llmg_0683/llmg_pseudo_19 | putative transposase helper protein for IS712B/pseudogene |
| Reads supporting (aligned to +/- strand): ref base A (1/4); new base . (366/375); total (368/379) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 749 total aligned reads displayed.
ATTCTAAAGTCATTTCTATTACTGGAAAATCTTATAGAATGAAAGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATGAACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCAT > AM406671/674707‑674994 | taGAATGAAAGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACactctactct > 2:7572315/1‑149 (MQ=11) aGAATGAAAGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACActctactcta > 1:1027985/1‑149 (MQ=14) gAATGAAAGACTATAGTTAGAAGAAAACCAAAACCCCAAAAAGTAAATATAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTTACACTCTACTCTaa < 1:3225670/149‑1 (MQ=255) aaTGAAAGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTaaa < 1:3283978/149‑1 (MQ=17) aaTGAAAGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTaaa > 2:3755289/1‑149 (MQ=17) tGAAAGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATc > 2:31399/1‑149 (MQ=21) tGAAAGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATc < 2:3868667/149‑1 (MQ=21) tGAAAGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATc > 2:4406930/1‑149 (MQ=21) gAAAGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTGCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCt < 1:8979017/149‑1 (MQ=255) aaaGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTa > 1:4593472/1‑149 (MQ=25) aGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCGTACATTTTCAAT‑AACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAAt > 2:5423640/1‑149 (MQ=255) aGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAAt > 1:2428094/1‑149 (MQ=255) cTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGaa < 1:4211119/149‑1 (MQ=255) tataGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGaaa > 1:9268837/1‑149 (MQ=255) ataGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAg > 2:2774993/1‑149 (MQ=255) ataGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAg < 1:8259376/149‑1 (MQ=255) taGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGc > 1:7170908/1‑149 (MQ=255) taGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGc > 1:111144/1‑149 (MQ=255) taGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGc > 2:7241214/1‑149 (MQ=255) aGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCGCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCt > 1:5760164/1‑149 (MQ=255) aGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCt > 1:4369763/1‑149 (MQ=255) aGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCt > 2:742467/1‑149 (MQ=255) aGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCt < 2:7743232/149‑1 (MQ=255) gTGAGAAGAAATCCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTc < 1:8591275/149‑1 (MQ=255) tGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTcc > 1:6500953/1‑149 (MQ=255) tttgggtaaccaaaaccCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGt < 1:3643275/142‑1 (MQ=255) agaagaAAACCAAAACCCCAAAACGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGt > 2:791042/1‑149 (MQ=255) aagaaAACCAAAACCCCAAAAAGTAAATNAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTCCTCTAAATCTAATGAAAGCTCCGtct > 1:5124397/1‑149 (MQ=255) gaaAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTctct > 1:8825259/1‑149 (MQ=255) aaaaccaaaaccCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTa > 2:6711200/1‑149 (MQ=255) aaaccaaaaccCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGCGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTaa < 2:8993397/149‑1 (MQ=255) aaccaaaaccCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTaaa < 1:5356635/149‑1 (MQ=255) aaccaaaaccCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTaaa < 2:8345129/149‑1 (MQ=255) aaccaaaaccCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGATGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTATaaa > 2:2502158/1‑149 (MQ=255) accaaaaccCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAg < 2:8585104/149‑1 (MQ=255) aaccCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATTGCTTTTAACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAACGCTGAt > 2:9100172/1‑149 (MQ=17) aaccCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGAt < 2:4536216/149‑1 (MQ=255) ccccAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGAttt > 2:3990852/1‑149 (MQ=255) aaaaaGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTa > 1:7388621/1‑149 (MQ=255) aaaaaGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTa < 2:2648754/149‑1 (MQ=255) aaaaaGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTa > 2:5061809/1‑149 (MQ=255) aaaaGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAg > 2:482004/1‑149 (MQ=255) aaaGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGa < 2:4194349/149‑1 (MQ=255) aaaGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGa < 2:9223722/149‑1 (MQ=255) aaaGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGa < 1:3539570/149‑1 (MQ=255) aaGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGaa > 1:610341/1‑149 (MQ=255) gTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTGCAATTTCAACG‑ACCCAAAACGGACATTATTAGATGGCCCTTGACACTCTACTCTAAATATAATGAAAGCACCGTCTCTAAAGCTGATTTTCTAGaaat > 2:1851826/1‑147 (MQ=18) taaataaaGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTACGTCTCTAAAGCTGATTTTCTAGAATTa > 2:35508/1‑149 (MQ=255) aaataaaGTGATGGGCCCAAAACCAACCATTTGGGTGGCCCATTTCCTACCTGCTCAATG‑ACCCAAAACCAACATTTTTACATGGCCCTTGACACTCTACACTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATGTTCTAGAATTaa > 2:1696822/1‑149 (MQ=18) aataaaGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTaaa < 1:293973/149‑1 (MQ=255) aataaaGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTaaa < 2:7758865/149‑1 (MQ=255) ataaaGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTaaaa > 1:1197823/1‑149 (MQ=255) ataaaGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTaaaa > 1:6856400/1‑149 (MQ=255) aaaGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAg < 1:1619977/149‑1 (MQ=255) aaGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGa > 1:7052252/1‑149 (MQ=255) aGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGAc > 1:3406089/1‑149 (MQ=255) gTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTGTCTAGAATTAAAAAGACa > 2:5719179/1‑149 (MQ=255) gATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAAc > 1:8106687/1‑149 (MQ=255) aTGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACt > 1:639750/1‑149 (MQ=255) aTGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACt > 2:8259911/1‑149 (MQ=255) tGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACATCTg < 2:8672683/149‑1 (MQ=255) gCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCt < 1:1814188/149‑1 (MQ=255) ccAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTaa > 2:7114932/1‑149 (MQ=255) cAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTaaa > 2:2384313/1‑149 (MQ=255) aaaCCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGt < 2:6565232/149‑1 (MQ=255) aaaCCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGt < 1:4418270/149‑1 (MQ=255) aaCCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGtt < 2:6402182/149‑1 (MQ=255) acaaTTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGga < 2:2163524/149‑1 (MQ=255) acaaTTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGga > 2:5968971/1‑149 (MQ=255) caaTTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGgaa > 1:4980444/1‑149 (MQ=255) caaTTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTCTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGgaa > 2:8138642/1‑149 (MQ=255) aaTTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGgaag > 1:2604822/1‑149 (MQ=255) aTTTGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGgaaga < 2:1179118/149‑1 (MQ=255) tttGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGgaagaa > 1:5262742/1‑149 (MQ=255) tttGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGgaagaa > 1:1944396/1‑149 (MQ=255) tGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAACTCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACg < 1:5619639/149‑1 (MQ=255) tGGGTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACg < 1:5559882/149‑1 (MQ=255) gTGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACgaga < 1:6688283/149‑1 (MQ=255) tGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGAc < 2:3619186/149‑1 (MQ=255) tGGCCCATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGAc < 2:5272195/149‑1 (MQ=255) cccATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATc < 2:8865508/149‑1 (MQ=255) cccATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATc < 1:3960137/149‑1 (MQ=255) cccATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATc < 1:7774484/149‑1 (MQ=255) cccATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATc > 2:4651442/1‑149 (MQ=255) ccATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCt > 2:560591/1‑149 (MQ=255) ccATTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCt < 2:5522051/149‑1 (MQ=255) aTTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTa > 1:7913027/1‑149 (MQ=255) aTTTCCTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTa > 2:150669/1‑149 (MQ=255) cTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGAc < 2:6169661/109‑1 (MQ=255) cTACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTaaaaaa > 1:278020/1‑149 (MQ=255) tACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTaaaaaaa > 1:83567/1‑149 (MQ=255) tACATTTTCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTaaaaaaa < 1:137715/149‑1 (MQ=255) ttttCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAAGCTAATGAAAGCTCCGTCGCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAGAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTAt < 1:3784405/149‑1 (MQ=255) tttCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGGATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTAtt < 1:1466328/149‑1 (MQ=255) tttCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTAtt > 1:228494/1‑149 (MQ=255) tttCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTAtt < 1:907904/149‑1 (MQ=255) ttCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTg > 1:5474331/1‑149 (MQ=255) tacAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAACAAAGTATTg < 1:4752319/147‑1 (MQ=255) tCAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGa > 2:3389872/1‑149 (MQ=255) cAATG‑ACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGAc < 1:6192124/149‑1 (MQ=255) | ATTCTAAAGTCATTTCTATTACTGGAAAATCTTATAGAATGAAAGACTATAGTGAGAAGAAAACCAAAACCCCAAAAAGTAAATAAAGTGATGGGCCCAAAACCAACAATTTGGGTGGCCCATTTCCTACATTTTCAATGAACCCAAAACCAACATTTTTAGATGGCCCTTGACACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCAT > AM406671/674707‑674994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |