| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,318,548 | (A)7→6 | coding (34/348 nt) | llmg_1344 → | hypothetical protein predicted by Glimmer/Critica |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,318,542 | 0 | A | . | 98.2% | 3715.8 / 56.6 | 818 | coding (28/348 nt) | llmg_1344 | hypothetical protein predicted by Glimmer/Critica |
| Reads supporting (aligned to +/- strand): ref base A (1/14); new base . (381/418); total (385/433) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.17e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 867 total aligned reads displayed.
AAGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTC > AM406671/1318394‑1318686 | aGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAGATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaa > 1:5567858/1‑149 (MQ=255) gACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAAACCTTAGaaa < 2:6839242/149‑1 (MQ=255) aCCCTTAATTTTGAGCTTTATTTTTTTTGATCCGAGATAGATGAGGAGCAGGCTCTGAAAGCAAAATTCGGAAATACAATTCTAGATTTTTGGAAGATCTGCACCCGTCACCCCGAAAATGAGCCTTGGGTTCTTGACTCCTTTGaaca > 2:2098392/1‑147 (MQ=255) ttAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaaaaaagg > 2:8627285/1‑147 (MQ=255) aTTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAg < 2:8123034/149‑1 (MQ=255) aTTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAg < 2:1480127/149‑1 (MQ=255) gAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTc > 1:4655141/1‑149 (MQ=255) tttATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTgg > 2:2242885/1‑149 (MQ=255) ttATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGt > 2:2806529/1‑149 (MQ=255) tATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTc > 1:7687241/1‑149 (MQ=255) aTTTTTGATGAACAGAGAGAGATGAGGAGCAGGATATGAAAGCAAAACGAGGAACCACGATTATAGATTTTTGGAAAATCAGCACCAGTAAACCTGAAATTGAACCTTGGGTTCTGAAAACCGTTG‑AAAAAAGGCAGATTGCCTGGTCa < 2:6414560/149‑1 (MQ=255) ttttttATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAg < 1:3948517/149‑1 (MQ=255) ttttATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATTAATCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGc < 2:4706309/149‑1 (MQ=255) ttttATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGc > 2:2634285/1‑149 (MQ=255) tttATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGcc > 2:33241/1‑149 (MQ=255) aTGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAt > 2:1638965/1‑149 (MQ=255) tGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAtt > 1:639206/1‑149 (MQ=255) tGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAtt < 2:4006576/149‑1 (MQ=255) tGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAtt > 1:4164659/1‑149 (MQ=255) gAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTTGTCAGGCCAAttt > 1:1329874/1‑149 (MQ=255) gAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAttt > 2:9140800/1‑149 (MQ=255) aaCAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTg > 2:3755228/1‑149 (MQ=255) aCAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGc > 1:4974020/1‑149 (MQ=255) aCAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGc > 1:8624985/1‑149 (MQ=255) cAGAGGTAGATGAGGAGCAGGATAGGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAACTCTTT‑TAAAAAAGACAGATGTCCTGTTCAGGCCAATCTGCt > 2:3124487/1‑149 (MQ=255) acgagaTAGATGAGGAGCAGGATATGAAAGCAAAATTAGGGAATACAATTATAGATTTTTTCAAAATCAGCACGAGTAAACCCGTAAATGAACCTTGGGTTCTAGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCt < 2:6647304/147‑1 (MQ=255) gatagatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGa < 1:9110286/149‑1 (MQ=255) gatagatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGa < 1:7381761/149‑1 (MQ=255) atagatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGaa > 1:2211655/1‑149 (MQ=255) agatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGa < 1:4708069/149‑1 (MQ=255) gatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAGTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGAc < 1:5713462/149‑1 (MQ=255) gatGAGGAGCAGGATATGAAAGCAAAATTAGGAAAAACAATTAGAGATGTTTGGAAAATCAGCAGCAGTAAACCCGAAAATGAACCATGGGTTCTTGAATACATTG‑AAAAAAGGCAGAATTACTGGTCAGGCCAATTTGCTATGAAGAc > 2:6175698/1‑149 (MQ=255) ggATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCaagcaagc < 2:4158093/149‑1 (MQ=255) ggATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCaagcaagc > 1:5202060/1‑149 (MQ=255) tatGAAAGCAAAATTAGGAAATACAATTATAGATTTTTTTTTTTTCTTCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAagcagc > 2:8896114/1‑149 (MQ=255) aGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTaa < 1:652109/149‑1 (MQ=255) aGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCNATGAAGACTGCAAGCAAGCAGCAACTaa < 1:5079564/149‑1 (MQ=255) gCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAAt > 1:1805927/1‑149 (MQ=255) cAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATa < 2:7979244/149‑1 (MQ=255) aaaTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGc > 1:2559732/1‑149 (MQ=255) aaTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCt < 1:4870113/149‑1 (MQ=255) aTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTa < 2:8438966/149‑1 (MQ=255) ttAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAg < 1:4347485/149‑1 (MQ=255) ttAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAg > 1:7231054/1‑149 (MQ=255) ttAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAg < 1:6205097/149‑1 (MQ=255) aGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTg < 1:3126342/149‑1 (MQ=255) ggAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTgg < 2:4591776/149‑1 (MQ=255) gAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGa < 1:8482302/149‑1 (MQ=255) aaaTACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGaa > 2:1022141/1‑149 (MQ=255) aaaTACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGaa < 1:227982/149‑1 (MQ=255) aTACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATg < 1:3757004/149‑1 (MQ=255) aCAATTATAGATTTTTGTTATTTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGAc > 2:6520798/1‑149 (MQ=255) aCAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGAc > 1:6644792/1‑149 (MQ=255) aCAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGAc > 1:3611695/1‑149 (MQ=255) aCAATGAAAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGAc < 2:5123587/149‑1 (MQ=255) aTTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCa > 1:8821240/1‑149 (MQ=255) ttATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaa < 2:4440136/149‑1 (MQ=255) tataGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaaa > 1:2095699/1‑149 (MQ=255) aGATTTTTGGAAACTCAGCACCAGTAAACCCGCAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATCACCCAAAAat > 2:3589349/1‑149 (MQ=255) gATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAata > 1:8302119/1‑149 (MQ=255) aTTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAatat < 1:1603631/149‑1 (MQ=255) ttttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTc < 2:1779163/149‑1 (MQ=255) ttttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTc > 2:6958685/1‑149 (MQ=255) tGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGc > 1:5369264/1‑149 (MQ=255) tGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGc > 1:240295/1‑149 (MQ=255) gAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTCGTGGAATGACCCAAAAATATTCAGCTg > 2:5474312/1‑149 (MQ=255) gAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTg > 2:491769/1‑149 (MQ=255) gAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTg < 2:8329321/149‑1 (MQ=255) aaaTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGAc < 1:9252119/149‑1 (MQ=255) cAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAAc < 1:30096/149‑1 (MQ=255) aGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACa > 1:6932766/1‑149 (MQ=255) gCACCAGTAGACGCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACat < 2:119906/149‑1 (MQ=255) ccAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataat < 2:9065092/149‑1 (MQ=255) cAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataata > 2:2343684/1‑149 (MQ=255) cAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataata > 2:5581391/1‑149 (MQ=255) gTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAAtata < 2:7506729/149‑1 (MQ=255) gTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAAtata > 1:2769245/1‑149 (MQ=255) aaaCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAgg < 2:5252631/149‑1 (MQ=255) aaaCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAgg > 2:7832070/1‑149 (MQ=255) cccGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCaa > 2:7147443/1‑149 (MQ=255) ccGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAAt > 2:2502540/1‑149 (MQ=255) gAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATga > 2:7273450/1‑149 (MQ=255) aaaaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATgag > 1:293758/1‑149 (MQ=255) aaaaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATgag < 2:7687241/149‑1 (MQ=255) aaaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATgaga > 2:5959619/1‑149 (MQ=255) aaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGAt > 1:749485/1‑149 (MQ=255) ccTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATa < 1:1038458/149‑1 (MQ=255) cTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGTAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATAc > 1:5822540/1‑149 (MQ=255) ttGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACt < 1:1160166/149‑1 (MQ=255) ttGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACt < 2:3875512/149‑1 (MQ=255) ttGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGAAAGGAAGGAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACt > 2:5764583/1‑149 (MQ=255) ttCTTGAATCCTTTG‑AAAAAAGGTACATTTCCTGGTCAGGCCAATTTGCAATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAGTATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGAc > 2:5006301/1‑149 (MQ=255) cTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTg < 1:3384001/149‑1 (MQ=255) tGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGt < 1:6048754/149‑1 (MQ=255) tGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGt < 2:828373/149‑1 (MQ=255) tGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGt < 1:2866683/149‑1 (MQ=255) aTCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAg < 1:8023149/149‑1 (MQ=255) aTCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAACTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAg > 1:815736/1‑149 (MQ=255) ccTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGt < 2:4288414/149‑1 (MQ=255) cTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTc > 2:4816569/1‑149 (MQ=255) | AAGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTC > AM406671/1318394‑1318686 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |