| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,921,435 | Δ1 bp | coding (76/660 nt) | llmg_1941 ← | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,921,434 | 0 | T | . | 99.7% | 4743.5 / 5.3 | 1004 | coding (77/660 nt) | llmg_1941 | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/2); major base . (551/447); minor base C (2/1); total (553/451) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1043 total aligned reads displayed.
AATAAGTAAACCGATTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGTTGACCATTAGGCATCTGGGCAAAATTCCGCCATCCACTCCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAGTTTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCT > AM406671/1921286‑1921581 | aTAAGTAAACCGATAGATAATTAGCCGTATCACAACGCCGCCAAACAACAAACGAAAAACAAAATTGAAACCCAAAGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGtg < 2:9156496/149‑2 (MQ=255) tAAGTAAACCGATTTATAATTTTCCGTTTGACATCGCCGCCAGTGAACCAACGAAAAACAAACTTGAATCCCCAGCTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGTTAATCGCTCCTATAACAACATAAATCCAAATGtga < 2:2133199/149‑3 (MQ=255) tAAGTAAACCGATTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGtga > 2:5463257/1‑147 (MQ=255) aaGTAAACCGATTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGtgac > 1:5349844/1‑146 (MQ=255) aGTAAACCGATTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGtgacc > 2:6610469/1‑145 (MQ=255) ttAAAACGATTGATAATTTTCCGTTAGACATAGCCGCCAATGAAACAAAGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGATCCTAAAACAACATAAATCCAAATG‑TGACCa < 2:6734026/148‑1 (MQ=255) tAAACCGATTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCAt < 2:4704765/149‑1 (MQ=255) tAAACCGATTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAAGCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACCTAAATCCAAATG‑TGACCAt < 2:7957605/149‑1 (MQ=255) tAAACCGATTGATAATTTTCCGTTTGACATCGCCGCCAAAGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCAt < 2:1989441/149‑1 (MQ=255) aaaCCGATTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCAtt < 1:3838284/149‑1 (MQ=255) aaCCGATTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTa > 1:9003992/1‑149 (MQ=255) gATTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCa > 2:3649391/1‑149 (MQ=255) aTTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCAt < 1:6359924/149‑1 (MQ=255) aTTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCAt > 2:2242622/1‑149 (MQ=255) tGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCt > 2:7683283/1‑149 (MQ=255) tAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTggg > 2:2654096/1‑149 (MQ=255) ttttCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCaa > 1:2052480/1‑149 (MQ=255) ttttCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCaa > 2:5675886/1‑149 (MQ=255) tttCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCaaa > 2:8132915/1‑149 (MQ=255) tttCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCaaa > 2:1366926/1‑149 (MQ=255) ttCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCaaaa < 2:3029828/149‑1 (MQ=255) tCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAAt < 1:4345148/149‑1 (MQ=255) tttGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATTcgc < 2:4136458/149‑3 (MQ=255) tttGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATTcgc < 1:1308601/149‑3 (MQ=255) tGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATTcgcca > 1:8836566/1‑145 (MQ=255) aTCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAAGAACATAAATCCAAATG‑TGACCATTATGCATCAGGGCATAATT‑CGCCATCCa > 1:4478820/1‑149 (MQ=255) ccgccAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACTca < 1:1755130/149‑2 (MQ=255) cgccAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACTcat > 1:2150357/1‑147 (MQ=255) ccAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACTcatta > 1:3561377/1‑145 (MQ=255) cAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTaa < 1:3093025/149‑1 (MQ=255) aaTGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTaaa < 1:3716646/149‑1 (MQ=255) tGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGa > 1:4215963/1‑149 (MQ=255) tGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGa < 1:2621245/149‑1 (MQ=255) gAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGaa < 2:8316398/149‑1 (MQ=255) aCCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAAc < 1:651657/149‑1 (MQ=255) ccAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAAcc > 1:9145549/1‑149 (MQ=255) aaCGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCaa > 1:2952079/1‑149 (MQ=255) aaCGAAAAACAAAATTGAATCCCCAAGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCaa > 2:5060767/1‑149 (MQ=255) cGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATGATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCaaaa > 2:6131469/1‑149 (MQ=255) cGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCaaaa < 1:718202/149‑1 (MQ=255) cGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCaaaa < 2:1706633/149‑1 (MQ=255) aaaaCAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATc > 2:7217067/1‑149 (MQ=255) aaCAAAATTAAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGa > 1:4773375/1‑149 (MQ=255) aaaaaaATGGAACCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGaa < 1:6240324/147‑1 (MQ=255) cAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGaaa > 1:6846690/1‑149 (MQ=255) aaaaTTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAg > 1:4926106/1‑149 (MQ=255) aaaaTTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAg < 2:4439617/149‑1 (MQ=255) ttGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGt > 2:283709/1‑149 (MQ=255) tGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTa < 2:6963877/149‑1 (MQ=255) tGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTa > 1:6039305/1‑149 (MQ=255) tGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTa > 2:8583478/1‑149 (MQ=255) tGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGATCCTACAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTa > 1:5168174/1‑149 (MQ=255) aaTCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCAATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACa > 2:4797129/1‑149 (MQ=255) tCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACaaa > 1:5259589/1‑149 (MQ=255) ccccAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAAc > 1:7828286/1‑149 (MQ=255) ccccAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAAc > 2:8429862/1‑149 (MQ=255) cccAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAGCCAAAAATCGAAAGTTGTACAAACa < 1:7600380/149‑1 (MQ=255) ccAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACat > 1:1649080/1‑149 (MQ=255) aaaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAatattcc > 1:5720998/1‑146 (MQ=255) aaaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATtcc > 1:7068244/1‑149 (MQ=255) aaaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATtcc > 2:8808795/1‑149 (MQ=255) aaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCt > 1:4034343/1‑149 (MQ=255) aaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCt > 1:3335142/1‑149 (MQ=255) aaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCt < 1:2773821/149‑1 (MQ=255) aGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCtt < 2:6323763/149‑1 (MQ=255) gggAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCtttt < 2:2905790/149‑1 (MQ=255) gAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCa > 1:1007701/1‑149 (MQ=255) aaaaTTACTAAACCTGTTTCAATAAAGATAAACGCTCCTAAAACAACATAAATCCAAATG‑TGACCAATAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CAATAAAAAAAACAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCaa < 2:3475577/149‑1 (MQ=255) aaTTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCaaaa > 1:5613582/1‑149 (MQ=255) ttACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGt < 1:6705591/149‑1 (MQ=255) ttACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGt > 2:5937749/1‑149 (MQ=255) aCTAAACCTGTTTCAATAAAGATAAACGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATAAAAAAAACAAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGtta < 2:7836723/149‑2 (MQ=255) tAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGttaaa > 2:247088/1‑146 (MQ=255) ccTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAAtt < 1:3196911/149‑1 (MQ=255) tGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCt > 1:815944/1‑149 (MQ=255) tGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCt > 1:2403106/1‑149 (MQ=255) gTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCtt < 2:1002464/149‑1 (MQ=255) tttCCATAAAGATAATCGCTCCTAAAACAACATAAATCCAAAT‑TTGACCACTACGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCCAAAATCAAAAGTTGTACAAACATAATATTCCTTTTCAATAG‑TTAAAAATTCTTa < 2:8986607/149‑1 (MQ=255) aaTAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGtt < 2:7095087/104‑1 (MQ=255) aaTAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagt < 2:3301977/149‑1 (MQ=255) aaTAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagt < 1:1522761/149‑1 (MQ=255) aaGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGtt < 1:8649884/149‑1 (MQ=255) aGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTc < 1:4584315/149‑1 (MQ=255) aaTAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCt < 2:4254481/148‑1 (MQ=255) aTAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAATAG‑TTAAAAATTCTTACAGTAGTTCTg < 1:5907331/149‑1 (MQ=255) cGCTCCTAAAACAACATAAATTCAAATG‑TGACTATTAGGCATCTGGGCAAAATT‑CGCCATTCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTat > 2:1578020/1‑148 (MQ=255) gCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACt > 1:7990445/1‑149 (MQ=255) cTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACtt > 1:5511679/1‑149 (MQ=255) tCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTa > 2:1222767/1‑149 (MQ=255) ccTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTaa < 2:6039305/149‑1 (MQ=255) cTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTaaa > 2:7369216/1‑149 (MQ=255) tAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAAt < 1:7491232/149‑1 (MQ=255) tAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAAt < 1:8429862/149‑1 (MQ=255) caTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACa > 2:5536448/1‑149 (MQ=255) aTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACAt > 1:8344474/1‑149 (MQ=255) tAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATa > 2:3887744/1‑149 (MQ=255) aaaTCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATaa < 2:4017820/149‑1 (MQ=255) tCCAAATG‑TGACCATTAGGCATCTGGGCNAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAata > 1:5078509/1‑149 (MQ=255) ccAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAatat < 2:4532492/149‑1 (MQ=255) cAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATAtc < 2:5273095/149‑1 (MQ=255) | AATAAGTAAACCGATTGATAATTTTCCGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGTTGACCATTAGGCATCTGGGCAAAATTCCGCCATCCACTCCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAGTTTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCT > AM406671/1921286‑1921581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |