| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 894,627 | +G | coding (1044/1062 nt) | llmg_0924 → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 894,624 | 1 | . | G | 98.4% | 3604.4 / 34.8 | 938 | coding (1041/1062 nt) | llmg_0924 | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (6/9); new base G (436/485); total (442/496) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
Only 100 of 1000 total aligned reads displayed.
CAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑GG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGTTTA > AM406671/894476‑894767 | cAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCt < 1:8940443/149‑1 (MQ=255) aaGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g < 1:3034799/149‑1 (MQ=255) aGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑gg > 2:207234/1‑149 (MQ=255) gTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑gg‑g > 2:2534653/1‑149 (MQ=255) taaattaaatTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑gg‑gg > 1:9266597/1‑148 (MQ=255) aattaaattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑gg‑ggaa > 1:8724375/1‑146 (MQ=255) aattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAagaaga < 2:3364180/149‑1 (MQ=255) tCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTa < 1:7599847/149‑1 (MQ=255) tCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTa > 2:8565586/1‑149 (MQ=255) gAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAg > 1:8175012/1‑149 (MQ=255) gATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGAttt < 1:1905955/149‑1 (MQ=255) gATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGAttt > 2:4401982/1‑149 (MQ=255) gTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTaga > 2:8251047/1‑149 (MQ=255) aaCGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTagaaa > 1:1426021/1‑149 (MQ=255) aaCGGATAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTACTTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTagaaa > 1:4003147/1‑149 (MQ=255) aCGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTGTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTagaaaa > 1:5579998/1‑149 (MQ=255) aCGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTagaaaa > 1:2079902/1‑149 (MQ=255) ggTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTagaaaaag < 1:6347072/149‑1 (MQ=255) ttAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTAATTATCAATTCTTTTAGCTCTTTTCTTCTGATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTagaaaaagaa < 2:3049829/149‑1 (MQ=255) aaaaaaaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTAATAATTATTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGAAAGAAGAGGCTGGG‑GAAGAAGAGTAAAAAAAaaaaaaagaaaa < 2:4278747/149‑1 (MQ=255) aaaaaaaCTACTTGGTATAAAAATTGGCTTATCTGGTTAAGCTTATTATTAATTATTATAACTCTTTTCTTCTTATTCTTTATTTTATGGAAAAGACGTAAAAAGAAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTaaaaaaaaaaaa < 2:8814631/149‑1 (MQ=255) aaaaaaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAgaaaaagaaaaa < 2:1782495/149‑1 (MQ=255) aaaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTg < 1:7291082/149‑1 (MQ=255) aaaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTg > 1:9159948/1‑149 (MQ=255) aaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGa < 1:7125455/149‑1 (MQ=255) aCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGaa > 2:2401780/1‑149 (MQ=255) ccTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGc < 1:3433297/149‑1 (MQ=255) cTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCt > 2:3831185/1‑149 (MQ=255) tGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCa < 1:5755985/149‑1 (MQ=255) ggTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCaa < 1:6238095/149‑1 (MQ=255) gTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAAc < 1:4644694/149‑1 (MQ=255) gTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAAc > 1:6107604/1‑149 (MQ=255) tATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACt > 1:850493/1‑149 (MQ=255) gAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGa > 2:7673217/1‑149 (MQ=255) aaaaTTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGaa > 2:7406935/1‑149 (MQ=255) aTTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGaaa < 1:4159118/134‑1 (MQ=255) aTTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCt < 1:6503142/149‑1 (MQ=255) ttGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTa < 2:5630379/149‑1 (MQ=255) ttGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTa > 1:6696427/1‑149 (MQ=255) tATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCGCAACTCGAAGCTATGagag > 1:4474020/1‑149 (MQ=255) aTCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGc < 2:226139/149‑1 (MQ=255) tCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGca < 2:6676574/149‑1 (MQ=255) cTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGcac < 2:1931384/149‑1 (MQ=255) cTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGGAAGATTAAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGcac > 2:2908071/1‑149 (MQ=255) ggTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaa < 2:6989852/149‑1 (MQ=255) gTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaa > 2:3647956/1‑149 (MQ=255) tAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaata > 1:154910/1‑149 (MQ=255) aGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaataa < 2:1449013/149‑1 (MQ=255) cTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAaataaata > 1:5859291/1‑149 (MQ=255) tattattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAAtaaataaa > 1:2740546/1‑149 (MQ=255) attattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAg < 2:5075156/149‑1 (MQ=255) ttattaATTATTTTAGCACTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAAAAAAAAAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGa < 2:6536195/149‑1 (MQ=255) tattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGat < 1:3859022/149‑1 (MQ=255) tattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGat > 2:8080299/1‑149 (MQ=255) tattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGat > 2:7879432/1‑149 (MQ=255) ttCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATaataat > 2:3954014/1‑149 (MQ=255) ttCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATaataat < 1:505192/149‑1 (MQ=255) tattttAAATCTTTTCTGGTTAGTCTTTATTTTATGGAAGAGACGTAAAAAGGAATAAGAGGCTGGG‑GAAGAAGAGTAAGATATAGAAAAAAAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAAtt < 2:630240/147‑1 (MQ=255) tCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAAtt > 2:4886721/1‑149 (MQ=255) tCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAAtt < 2:343291/149‑1 (MQ=255) tCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAAtt < 2:3245019/149‑1 (MQ=255) cTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTc > 1:241531/1‑149 (MQ=255) tttAGCTCTTTTCTTCTTATTCTTTATTTTATGGTAGAGACGTATAAAGGAAGAAGAGGCTGGG‑GAAGATGAGGAAGATTTCGAAAAAGAAAAATTGAAAGCTCAAGTAGAAGCTATGAGAGCACAAATAGATAGAGATAATAATTCTg > 2:5298218/1‑149 (MQ=255) ttAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGACGAAGAGGCT‑GGTTTAGAAGAGTAAGATTTAGAAATAGTAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGa > 2:6850857/1‑149 (MQ=255) tAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGCGTAAGATTTAGAAAAAGAAAACTTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGACAATAATTCTGAt > 2:7572713/1‑149 (MQ=255) tAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGAt > 1:2283363/1‑149 (MQ=255) gCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATgg > 1:1242333/1‑149 (MQ=255) gCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATgg > 1:8326207/1‑149 (MQ=255) ctctTTTCTTCTTATTCGTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCGCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATggg < 2:5855569/149‑1 (MQ=255) tctTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGa < 2:8460154/149‑1 (MQ=255) tttCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAg > 2:1613174/1‑149 (MQ=255) tttCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAg < 2:4079130/149‑1 (MQ=255) ttcttATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGatat > 2:1293936/1‑149 (MQ=255) cttATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGACAGCACAAATAAATAAAGATAATAATACTGAGGGGACAGCGAttt > 1:5406061/1‑149 (MQ=255) aatacTTTATTTTAAGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGAAAAAAAAAAAAAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAg < 2:6033777/145‑1 (MQ=255) tCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGAt > 1:7481305/1‑149 (MQ=255) ttttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACtt > 1:699189/1‑149 (MQ=255) ttttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACtt > 1:6827454/1‑149 (MQ=255) ttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAg < 1:1003462/149‑1 (MQ=255) ggAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAttt > 1:2886941/1‑149 (MQ=255) gAAGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAtttt < 1:5229308/149‑1 (MQ=255) aaGAGACGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTc < 1:7880620/149‑1 (MQ=255) gagaCGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTa < 1:5979048/149‑1 (MQ=255) gagaCGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTa < 2:6386835/149‑1 (MQ=255) gagaCGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTa > 1:8030470/1‑149 (MQ=255) aCGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAAtt < 1:3782815/149‑1 (MQ=255) cGTAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTGAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTa < 2:1117778/149‑1 (MQ=255) tAAAAAGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATGTAGAAAAAGAAAAAGTGAAAGCTCAACTTGAAGATATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATg < 2:2652547/149‑1 (MQ=255) aaaGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGatt < 2:9196623/149‑1 (MQ=255) aaGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGatta > 1:3616454/1‑149 (MQ=255) aGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGattat < 1:3226898/149‑1 (MQ=255) aGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGattat < 1:2567404/149‑1 (MQ=255) aGGAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGattat > 2:7136147/1‑149 (MQ=255) ggAAGAAGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGa > 1:4325423/1‑144 (MQ=255) gaagaaGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTAttt < 2:4580404/149‑1 (MQ=255) gaagaaGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTAttt < 1:1775069/149‑1 (MQ=255) gaagaaGAGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTAttt < 1:4846646/149‑1 (MQ=255) gaagaGGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACg > 2:8691290/1‑149 (MQ=255) gagGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGttt > 1:770752/1‑149 (MQ=255) agGCTGGG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGTtta < 2:9011591/149‑1 (MQ=255) | CAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑GG‑GAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGTTTA > AM406671/894476‑894767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |