| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 549,527 | (T)6→7 | intergenic (‑197/‑190) | tnp905 ← / → tdk | transposase for insertion sequence element IS905B/Tdk protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 549,521 | 1 | . | T | 97.3% | 4076.0 / 72.4 | 1050 | intergenic (‑191/‑196) | tnp905/tdk | transposase for insertion sequence element IS905B/Tdk protein |
| Reads supporting (aligned to +/- strand): ref base . (8/20); new base T (515/501); total (524/526) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.21e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1166 total aligned reads displayed.
AACGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑TTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTTAAATAA > AM406671/549373‑549664 | aCGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑t < 1:3403251/149‑1 (MQ=255) ggATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttt < 1:8924462/149‑1 (MQ=255) ggATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttt > 1:6782023/1‑149 (MQ=255) ggATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttt > 1:2269926/1‑149 (MQ=255) ttATTCCTTTTTTTTTTTTTTCAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTATATTCTTAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttttttt > 2:1784512/1‑148 (MQ=255) ttATTCCTTTTTTTTTTTTTTCAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATTACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttttttt > 2:6282377/1‑148 (MQ=255) aTTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑tttttttga < 2:3538048/149‑4 (MQ=255) tCCTTTTTGTTTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑tttttttgaag > 2:1171336/1‑144 (MQ=255) ccTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGt > 1:3845643/1‑149 (MQ=255) cTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTa < 1:1182675/149‑1 (MQ=255) ttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGa < 1:5144273/149‑1 (MQ=255) tgtgTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGAt < 2:5130348/149‑1 (MQ=255) gtTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATaaa > 1:629490/1‑149 (MQ=255) tACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAtc > 1:668409/1‑149 (MQ=255) aaCTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTa < 2:9187786/149‑1 (MQ=255) aaCTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTa > 1:7567015/1‑149 (MQ=255) cTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAg > 1:7007390/1‑149 (MQ=255) ttATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTTATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATTCCTTTTTTTTAAGTAATGTTAAAATTTCTTAAGa > 2:5361262/1‑149 (MQ=255) tttACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCg < 2:5917153/149‑1 (MQ=255) cacTACAAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAg > 2:4314681/1‑149 (MQ=255) acTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATACAATCTCTTAAGATTCGGTAGa > 2:2975357/1‑149 (MQ=255) acTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGa > 1:8063248/1‑149 (MQ=255) tACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGTATAAAATCTTTTAAGATTTGGttgtat > 2:2799317/1‑144 (MQ=255) tACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATCCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAAt < 1:5618699/149‑1 (MQ=255) aaGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATACGATGAAAAATAGATGCCTTTTTTTGAATTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAgg < 2:6135045/149‑1 (MQ=255) aaGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAgg < 1:1681763/149‑1 (MQ=255) aaGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAgg > 1:2968838/1‑149 (MQ=255) aGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGa > 2:9033997/1‑149 (MQ=255) gAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGAt > 1:8965567/1‑149 (MQ=255) gatgatGAAAATTGAATTTAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGa > 1:2700938/1‑149 (MQ=255) gatgaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGt > 2:7302118/1‑149 (MQ=255) tgaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGttt > 1:5405546/1‑149 (MQ=255) attgaattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAg < 1:5946953/149‑1 (MQ=255) attgaattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAg < 2:2033366/149‑1 (MQ=255) ttgaattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGt < 2:5601114/149‑1 (MQ=255) tgaattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTa < 1:374886/149‑1 (MQ=255) tgaattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTa < 2:6721527/149‑1 (MQ=255) attgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTaaaa > 1:4840054/1‑149 (MQ=255) attgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTaaaa < 2:4923785/149‑1 (MQ=255) tgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACt < 1:1531411/149‑1 (MQ=255) aGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAg > 2:2597989/1‑149 (MQ=255) gTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGc > 2:8076782/1‑149 (MQ=255) gTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGc < 1:3096127/149‑1 (MQ=255) aaaGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCa > 1:852942/1‑149 (MQ=255) aaGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaa < 1:8252809/149‑1 (MQ=255) aaGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaa < 2:7691398/149‑1 (MQ=255) aGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTATTGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaaa > 2:7471381/1‑149 (MQ=255) aGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaaa < 2:7039960/149‑1 (MQ=255) gCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAaat < 2:1549120/149‑1 (MQ=255) ttttAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAaataa < 1:1865337/146‑1 (MQ=255) gTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAtt > 1:5251140/1‑149 (MQ=255) tAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAttt > 2:6012052/1‑149 (MQ=255) tttttAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTTAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTa > 1:4979861/1‑149 (MQ=255) tttttAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTa < 1:2407257/149‑1 (MQ=255) tttttAGATTCATAACTAGGTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTa < 1:252739/149‑1 (MQ=255) tttAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATg > 1:3992860/1‑149 (MQ=255) tAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGa > 1:4411895/1‑149 (MQ=255) aGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGAt < 2:7823547/149‑1 (MQ=255) tCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGa < 1:1428878/149‑1 (MQ=255) tCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAGCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGa > 1:5767521/1‑149 (MQ=255) gTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGaa < 1:6614652/149‑1 (MQ=255) gTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGaa < 2:7934601/149‑1 (MQ=255) ttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAtt < 2:8318443/149‑1 (MQ=255) tATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAttt < 2:4144380/149‑1 (MQ=255) ttCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGa < 1:8671210/149‑1 (MQ=255) ttCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGa > 1:6381771/1‑149 (MQ=255) tCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGaa < 2:3109715/149‑1 (MQ=255) cAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGaaa > 1:4600405/1‑149 (MQ=255) agaaagaaTATAAGATGAAAAATAGATGCCTTTTTTTTAAGTAAGGATAACATCTCTTAAGATTCGGTACAATCAGGATGAGGAAGTTCTTACGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTCAAAg > 2:25255/1‑149 (MQ=255) aaagaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGaa < 2:37880/149‑1 (MQ=255) agaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAata < 1:8782831/149‑1 (MQ=255) agaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAata > 2:6523895/1‑149 (MQ=255) gaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAatat < 1:6227392/149‑1 (MQ=255) aaTATAAGATGAAAAATAGATGCCTTTTTTTTTTTTTTTTATAAAATCTATTAAGATTCGTTAGAATCAGGATGAGTAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGATTTTGTAAGAatatt > 2:891092/1‑148 (MQ=255) aaTATAAGATGAAAAATAGATGCCTTTTTTTTTTTTATGTATAAAATCTCTTAAGATTCGGTAGAATCAGTATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAatata > 2:8700719/1‑149 (MQ=255) aaTACAAGCTGAAAAATAGATGCCTTTTTTTGAAGTTGGGATAAAAAATCTTAAGATTCGGTAGAATCATGATTAGGAAGTTTTGAAGTAATATTAGGTTATTCCAAATAATTTATATGGATAAAATTTTGTGAATTTGAACGAataca > 2:2313216/1‑147 (MQ=255) atatAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAatatat > 1:7947665/1‑149 (MQ=255) tataAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATAtt > 1:7315172/1‑149 (MQ=255) ataAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATAttt < 1:1000809/149‑1 (MQ=255) ataAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATAttt > 2:1440844/1‑149 (MQ=255) taAGATGAAAAATAGATGCCTTTTTTTTTTTTTTGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTATTTCTAGCTTACTCAAAATAATTTTTATGGATAAGATTTTTTGAATTTTAAAGTATATATTTa > 2:4498185/1‑149 (MQ=255) taAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATGCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATCTTGTGAATTTGAAAGAATATACTTa < 2:1032687/149‑1 (MQ=255) aGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAg > 1:3565893/1‑149 (MQ=255) gATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATACAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGa < 2:8568179/149‑1 (MQ=255) gATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGa > 2:3687989/1‑149 (MQ=255) aTGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAACTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGaa < 2:5775098/149‑1 (MQ=255) gAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAtt > 2:3352405/1‑149 (MQ=255) gAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAtt < 1:2063079/149‑1 (MQ=255) aaaaaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAttt < 1:3286035/149‑1 (MQ=255) aaaaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAtttt > 1:9177445/1‑149 (MQ=255) aaaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAttttt > 1:7149224/1‑149 (MQ=255) aaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCACATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTta > 1:412619/1‑149 (MQ=255) aaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTta < 2:7140866/149‑1 (MQ=255) aTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaa < 2:6935650/149‑1 (MQ=255) tAGATGCCTTTTTTTTAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaa > 2:4019536/1‑149 (MQ=255) aGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaat < 1:4244333/149‑1 (MQ=255) gATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaata < 1:2883552/149‑1 (MQ=255) gATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaata > 1:7799272/1‑149 (MQ=255) aaTGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaata < 2:4733623/148‑1 (MQ=255) aTGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaataa > 1:8397879/1‑149 (MQ=255) | AACGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑TTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTTAAATAA > AM406671/549373‑549664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |