| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 2,112,674 | +T | intergenic (‑79/+54) | llmg_2151 ← / ← llmg_2152 | Hypothetical protein ycaQ/Hypothetical protein ycaQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 2,112,670 | 1 | . | T | 99.0% | 3755.2 / 18.2 | 963 | intergenic (‑75/+58) | llmg_2151/llmg_2152 | Hypothetical protein ycaQ/Hypothetical protein ycaQ |
| Reads supporting (aligned to +/- strand): ref base . (9/1); new base T (436/515); total (445/518) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.42e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1061 total aligned reads displayed.
TTTTGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑TTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGAT > AM406671/2112522‑2112813 | tttGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑t > 2:746154/1‑149 (MQ=255) tttGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑t < 1:7076750/149‑1 (MQ=255) cGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑tttttc < 2:1125373/149‑3 (MQ=255) cGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑tttttc < 1:4100600/149‑3 (MQ=255) cGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑tttttc > 2:7172332/1‑147 (MQ=255) gTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAGTTTCCACTTTCCAAATGACGCAAATCTTTGGGAAAAAGATATTC‑tttttca > 1:4482217/1‑146 (MQ=255) tCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑tttttcag < 1:1522860/149‑5 (MQ=255) ccATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑tttttcaga > 1:4840886/1‑144 (MQ=255) ccATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATATTTGGCAAAAATATATTC‑tttttcaga < 2:3432073/149‑6 (MQ=255) aTTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCagaga > 1:4296671/1‑149 (MQ=255) tttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTa < 2:2048116/149‑1 (MQ=255) ttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTAt > 1:5450713/1‑149 (MQ=255) ttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTAt < 1:3664280/149‑1 (MQ=255) tATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTAtt > 2:4239912/1‑149 (MQ=255) tATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTAtt < 1:2139207/149‑1 (MQ=255) tATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTAtt > 2:884959/1‑149 (MQ=255) atgatgAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTAttt < 1:7570277/149‑1 (MQ=255) atgatgAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTAttt < 1:8460071/149‑1 (MQ=255) atgatgAAAAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTAttt < 1:5291883/149‑1 (MQ=255) gatgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTAttttt < 1:5966161/149‑1 (MQ=255) atgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTc < 2:2463293/149‑1 (MQ=255) gaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTg > 2:3912589/1‑149 (MQ=255) aataatCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGa < 1:1019727/149‑1 (MQ=255) aataatCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGa < 1:5683741/149‑1 (MQ=255) ataatCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGAt < 1:7944554/149‑1 (MQ=255) taatCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGAtt < 2:4018202/149‑1 (MQ=255) taatCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGAtt > 1:6809387/1‑149 (MQ=255) aatCAGCTCACCTTTAACATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGAttt > 1:7398680/1‑149 (MQ=255) atCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTc > 2:5109276/1‑149 (MQ=255) tCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCa > 1:227145/1‑149 (MQ=255) aGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAat < 2:2998568/149‑1 (MQ=255) gCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAatc > 1:6527069/1‑149 (MQ=255) cACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAatcatc > 2:6789618/1‑149 (MQ=255) ccTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATcatcat > 2:7961795/1‑149 (MQ=255) ttAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTg < 1:8773697/149‑1 (MQ=255) tAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGt > 2:10333/1‑149 (MQ=255) aaTACATGGTTTCAAGCGCGGCTCTTGCCACGGATGCAGAGACACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAATATATATTCTTTTTCGGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGa > 2:6187948/1‑149 (MQ=255) aaTACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGa > 2:606356/1‑149 (MQ=255) aaTACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGa < 2:5352597/149‑1 (MQ=255) aTACATAGTTCCAATGGCGGCTATAACCACGGATGAAGAGGCACAACAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGaa < 2:1670129/149‑1 (MQ=255) aCATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCGCCGCAATCCCAAATCAAATTGCCACTTTCCAACTGACGCAAATCTTTAGCAAAAGTATATTCGTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACa < 2:6630992/149‑1 (MQ=255) aCATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACa > 1:2602377/1‑149 (MQ=255) aCATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACa < 1:1286679/149‑1 (MQ=255) aTGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAgg < 2:8151297/149‑1 (MQ=255) tGGTTTCAAGCGCGGCTCTTGCCACGGANAAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGt > 1:5114842/1‑149 (MQ=255) ggTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGtt < 1:6233511/149‑1 (MQ=255) tCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACt < 2:7073017/149‑1 (MQ=255) tCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACt > 2:2327377/1‑149 (MQ=255) aaGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACttt > 1:8600585/1‑149 (MQ=255) aGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTg < 2:5169864/149‑1 (MQ=255) aGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTg > 1:2983936/1‑149 (MQ=255) gcgcGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGt < 2:4929762/149‑1 (MQ=255) gCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTAcg > 1:6907235/1‑149 (MQ=255) ttGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGcc > 2:3800576/1‑149 (MQ=255) cGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCt > 1:7647602/1‑149 (MQ=255) ggATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCtt < 1:1147171/149‑1 (MQ=255) agagGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCAt < 2:2616626/149‑1 (MQ=255) gagGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATa < 1:3422598/149‑1 (MQ=255) agGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAg > 2:5931221/1‑149 (MQ=255) cccccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGa < 1:579250/148‑1 (MQ=255) ccccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGAt < 1:3912589/149‑1 (MQ=255) cccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGAtt < 1:8894333/149‑1 (MQ=255) aaTCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTATAGAACAGGTTCACTTTGTCTCCGTGCCATTGCTTCTGCATAGCTGTTTccc < 2:1494869/149‑1 (MQ=255) tCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTTTTTTTTTTTTTTTATGATTTCAATCATCATTTGTAGAATAGGTTCTTTTTGTCTACTCGCCATTGCTTCTGCATAGCTGATTCCCGc > 2:3262630/1‑149 (MQ=255) cccAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCa < 2:3690419/149‑1 (MQ=255) ccAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCat < 2:9039285/149‑1 (MQ=255) ccAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCat < 2:6906971/149‑1 (MQ=255) caaatcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCata < 2:6495881/149‑1 (MQ=255) aaatcaaatGTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTCTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCatat > 1:4749669/1‑149 (MQ=255) aatcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCTGTTTTTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATAtt > 2:1893285/1‑149 (MQ=255) aatcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATAtt < 1:5622361/149‑1 (MQ=255) aatcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATAtt < 2:7658547/149‑1 (MQ=255) aatcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATAtt > 1:2781975/1‑149 (MQ=255) aatcaaatTTCAACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCAATTGATTCTGCATAGCTGATTCCCGCAtttt > 2:5730620/1‑149 (MQ=255) atcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATAttt > 2:4432655/1‑149 (MQ=255) caaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTc < 1:9096474/149‑1 (MQ=255) ttCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCGATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGt < 2:5552963/149‑1 (MQ=255) ttCCACTTTCCAAACGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGt < 2:8381831/149‑1 (MQ=255) ccAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGt < 2:2881867/149‑1 (MQ=255) ccAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGt < 2:476131/149‑1 (MQ=255) aaaTGACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCa < 1:7228363/149‑1 (MQ=255) gACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtc < 2:8600585/149‑1 (MQ=255) gACGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtc < 1:8147214/149‑1 (MQ=255) aCGCAAATCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtct < 1:940782/149‑1 (MQ=255) aaaTCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCCTCTa > 2:4627677/1‑149 (MQ=255) aaTCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTAt < 1:4567199/149‑1 (MQ=255) aTCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTAtt > 1:6343941/1‑149 (MQ=255) tCTTTGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCCATCATCATTTTTAGAACAGGTTCACTTTTTTTTCGCGCCCTTGCTTCTGCATAGCTGATTTCCGCTTATTTTTGTAGTAAATACTGTCAAATCTTCTATTg > 2:1339645/1‑149 (MQ=255) tttGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGc > 2:9187403/1‑149 (MQ=255) ttGGCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCa > 1:173577/1‑149 (MQ=255) gCAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCaaaa > 1:8420542/1‑149 (MQ=255) cAAAAATATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAAt < 2:8743511/149‑1 (MQ=255) aaaaaTATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATa > 1:3300187/1‑149 (MQ=255) aaaaTATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAACAACTGTCAAATCTTCTATTGGCAAAATAc > 1:2427366/1‑149 (MQ=255) aaaaTATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATAc > 2:7794923/1‑149 (MQ=255) aaaaTATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATAc < 1:6082269/149‑1 (MQ=255) aaaTATATTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACa > 1:3197464/1‑149 (MQ=255) atatatTCTTTTTCAGAGAGTATTTTTCTGCTTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATCTTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACaaa > 2:7306839/1‑149 (MQ=255) tatatTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAg < 2:6343941/149‑1 (MQ=255) tatTCTTTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTCCGCGCCATTGCTTCTGCCTAGCTGATTCCCGCCTATTTTCGAAGTAAAAACTGTCACATCTTCTATTGGCAAACTACAAAgct > 2:2229063/1‑147 (MQ=255) | TTTTGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑TTTTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGAT > AM406671/2112522‑2112813 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |