| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM406671 | = 84512 | NA (NA) | 44 (0.040) +AAAA |
32/288 | 34.8 | NA | pseudogene (177/729 nt) | tnp1077 | pseudogene |
| ? | AM406671 | 84526 = | NA (NA) | pseudogene (191/729 nt) | tnp1077 | pseudogene | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TTATCGCCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM406671/84371‑84512‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAAAGCTTACCTCAACCCTTATATGGATCTGTTTAATCGT > AM406671/84526‑84665 |||| ttaacaaCCCATGGTAAAACTTTTAAAGCGTGAAGGATATATAGTTAAACATAAAAAAGTTCAACGATTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGAAGGAAAACACGAAAGTATAGTTCCTAAAGAAAAAAAAAAAAAA < 2:6279885/142‑1TTATCGCCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAGAA < 2:4969514/149‑1 TATCGCCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAA < 2:694789/149‑1 ATCGACCCATGGTAGAACTTTTAAAACGTAAAGGATATAATGTAAACCATAAAAAAGTACAAAGTTTAATGAGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCATACAGAGGAAAAAAAAAAAAA < 2:6876209/149‑1 TCGCCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAA < 2:8563842/149‑1 cgaCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTAGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAAA < 2:6703703/146‑1 CCCCATGGTAGAACTTTTAAAGCGTTAAGGATATATTGTTAACCATAAAAAAGTTAAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTAGGAAGAAAACACGAATGTATAGTTCCTACAGAGGAAAAAAAAAAAAAAATT < 2:1441919/149‑1 CCCATGGTAGAAATTTTAAAGCGTGAAGGATATATTGTTAAACATAAAAAAGTACAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTT < 2:5872969/149‑1 CCATGGTAAAACTTTTAAAGCGTGAAGGATATAGTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAGACAAAAAAAATTTA < 2:6433891/149‑1 aagaaaaTTTAAAGCATGAAGGATATATTGTTAACAATAAAAAAGTTCAACGTTTAAAGCGAAAGCTAGGACTTTGTATTACTTCATTAAGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTAAAT < 2:3243300/142‑1 TAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAAATTTATTAAAT < 2:7926115/149‑1 TAGAACTTTTAAAGCGTGAAGAATATATTATTAACCATAAAAAAGTTCAACGTATAATGAGAAAGCTAGGAATTTGTAATACTTCTTTTTCGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAACAAAAAATTTATTAAAT < 2:1479641/149‑1 AACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAACAAAAAAAATTTATTAAATAGA < 2:4311408/149‑1 aaGAAGGATATAATGTTAACCATAAAAAAGTTTAACGTTTAATGCGAAAGATAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCC < 2:2865552/147‑1 TGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAGACACAAAAAATTTATTAAATAGACGTTTTAATTCCA < 2:7598347/149‑1 agaaaATATTGTTAACCATAAAAAAGTTCAACGATTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAAAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAG < 2:559774/144‑1 aagagATATTGTTAACCAGAAAAATGTTAAACGTTTAATGCGAAAGAAAGGACTTTGTATTACTTCTTTTAAGAAAAAAACACGAAAGTATAGTTCCTACAGAAGAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAG < 2:828270/144‑1 AGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAGAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAG < 2:9159684/149‑1 ATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTG < 2:4117481/149‑1 ATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAGAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTG < 2:1221817/149‑1 ATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGATAGGACTTTGTATTACTTCTTTTTGGAGGAAAACAAGAAAGTATAGTTCCTACAGAGAAAAAAACAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTG < 2:10951/149‑1 taaatcGTTAACCATAAAAAAGTACAACGTTTAATGCGAAAGCTAAGACTATGTATTACTTCTTTTTGGAGGAAAACACGAATGTATAGTTACTACAGAGAAAAAAACAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGT < 2:8705196/143‑1 TTGTTAACAATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAATATAGTTCCTACAGAGAAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCAT < 2:93322/149‑1 GTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAAAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCA < 2:4332137/149‑1 AACATTTAATGCGAAAGCTAGGACTGTGTATTACTTCTTTTAAGAGGAAAACACGAAAGTATAGTGCCTACATAGAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACT < 2:4458789/149‑1 GTTTAATGAGAAAACGAGAACATAGTATCACTTCTTTATGAAGGAAAACAAGAAAGTATAGTTCCTACAGAGGAAAAAACAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTAATCAAAAACTGGTAACTGATACTACT < 2:6082009/149‑1 TTTAATGCAAAAGATAGAACTTTGTATTACTTCTATTTAGAAGAAAACACGAAAGTATAGATCCTACAGAAAAAAAGAAGAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTG < 2:841573/149‑1 ATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTT < 2:6553750/149‑1 AAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAGACACAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAAT < 2:559300/149‑1 AAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAAT < 2:559232/149‑1 AAGCTAGGATATTGTATTACCTCTCTATAGAGGAAAACACGATAGCATAGTTCCTACAAAGAAAAAAAAGAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATA < 2:8913976/149‑1 GCTAGGACTTTGTATTACTTCTTTTTGGAAGAAAACAAGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACT < 2:2058915/149‑1 GGACATTGTATTACTTCTTGTAGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGA < 2:929746/149‑1 GACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAAGAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGAT < 2:4112759/149‑1 TTTGTATTACTTCTTATTAGAAGAAAAAACGAAAGTATAGTTCCTACAGAAGAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAAT < 2:8984802/149‑1 TACTTCTTTTTGAAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAG < 2:3909584/149‑1 tcaatcTGGAAGAAAACAGGAGAGGAAAGTTCCTAGAGAGAAAAAAAAGAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTAATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAA < 2:7992921/143‑1 GGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAACAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAAAGCTTAC < 2:1725292/149‑1 ACGAAAGTATAGTTCCTACAGAGGAAAAATAACAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAAAGCTTACCTCAACC < 2:4138995/149‑1 aAAAGTATAATTCCTACAGAAAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAAAGCTTACCTCAACCCT < 2:7621234/148‑1 AAAGTATAGTTCCTACAGAGAAAAAAACACAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAAAGCTTACCTCAACCCTT < 2:4610824/149‑1 AGAGGAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAAAGCTTACCTCAACCCTTATATGGATCTGTTTAA < 2:6325540/149‑1 ttaGAAAAGAAGCAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATCGGCAAGTGAAGAAAGCTTACCTCAACCCTTATATGGATCTGTTTAAT < 2:141675/146‑1 aAAAAATAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAAAGCTTACCTCAACCCTTATATGGATCTGTTTAATCGT < 2:7078778/148‑1 |||| TTATCGCCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM406671/84371‑84512‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAAAGCTTACCTCAACCCTTATATGGATCTGTTTAATCGT > AM406671/84526‑84665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |