New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM406671 1229363 =NA (NA)183 (0.170) 39/296 32.8 NA coding (222/261 nt) llmg_1260 conserved hypothetical protein
?AM406671 1232380 = NA (NA)coding (127/261 nt) llmg_1264 putative transposase helper protein for IS981
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 897 total aligned reads displayed.

CAGAAATTAAGGGTGCTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCATTCTATAAGAT  >  AM406671/1229215‑1229508
                                                                                                                                                    |                                                                                                                                                 
cAGAAATTAAGGGTGCTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACt                                                                                                                                                   >  2:2327570/1‑149 (MQ=255)
aaGAAATTAAGGGTACTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACt                                                                                                                                                   <  2:1327527/148‑1 (MQ=255)
 aGAAATTAAGGGTGCTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGAGTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCATCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTg                                                                                                                                                  <  2:2152452/149‑1 (MQ=255)
  gAAATTAAGGGTGCTTTAACCTATGCAGATAAAGTTGTGCAAAAGCTTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGt                                                                                                                                                 <  2:2017994/149‑1 (MQ=255)
   aaaTTAAGGGTGCTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTc                                                                                                                                                <  1:1650386/149‑1 (MQ=255)
     aTTAAGGGTGCTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCaa                                                                                                                                              <  1:5946519/149‑1 (MQ=255)
        aaGGGTGCTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTCATGATGTTACTGTCAAggg                                                                                                                                           >  1:4466471/1‑149 (MQ=255)
         aGGGTGCTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGc                                                                                                                                          >  1:7330124/1‑149 (MQ=255)
           ggTGCTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCa                                                                                                                                        <  1:473165/149‑1 (MQ=255)
             tGCTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATc                                                                                                                                      <  1:7069422/149‑1 (MQ=255)
                tttAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGAACTAGCATTAAAATCAGGGGATGGACTTCTTTACGTAGAAGGCGGATTCTTCTAAAACCTAACAGTAAAACTTATTAATATTTATGATGTTACTGTCAAGGGCCATATaa                                                                                                                                   >  2:8776544/1‑149 (MQ=255)
                 ttAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTaaa                                                                                                                                  >  1:9141744/1‑149 (MQ=255)
                  tAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTaaaa                                                                                                                                 <  2:7950126/149‑1 (MQ=255)
                   aaCTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTaaaaa                                                                                                                                >  1:8166304/1‑149 (MQ=255)
                   aaCTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTaaaaa                                                                                                                                >  1:8232395/1‑149 (MQ=255)
                   aaCTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTaaaaa                                                                                                                                >  1:3780543/1‑149 (MQ=255)
                     cTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATg                                                                                                                              >  1:8820536/1‑149 (MQ=255)
                           aaGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGtt                                                                                                                        <  1:2636923/149‑1 (MQ=255)
                             gATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGtttt                                                                                                                      >  2:9103951/1‑149 (MQ=255)
                             gATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGtttt                                                                                                                      >  2:8516234/1‑149 (MQ=255)
                              aTAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTg                                                                                                                     >  2:1658943/1‑149 (MQ=255)
                               tAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTgg                                                                                                                    >  1:97127/1‑149 (MQ=255)
                                  aGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTc                                                                                                                 >  2:1837519/1‑149 (MQ=255)
                                     tgtgCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCAtt                                                                                                              >  1:3319777/1‑149 (MQ=255)
                                          aaaaGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGaaaa                                                                                                         >  2:4743483/1‑149 (MQ=255)
                                           aaaGATTGTAGGACTAGCACTAGAATCAGTGGATGGACCTCTATCCGTAAAAGACGGAGTCTTCTCAAACCTAACAGGCAAACTTATTAATACTGATGATGTTACTGACAAGGGACATCTAAAAATGTTGGTATTGGGTCATTGaaaag                                                                                                        >  2:1109386/1‑148 (MQ=255)
                                            aaGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATg                                                                                                       >  1:5358271/1‑149 (MQ=255)
                                              gATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTa                                                                                                     >  1:5147807/1‑149 (MQ=255)
                                              gATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTa                                                                                                     <  1:5642163/149‑1 (MQ=255)
                                               aTTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAg                                                                                                    <  1:3627096/149‑1 (MQ=255)
                                                 tGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGa                                                                                                  >  1:6568815/1‑149 (MQ=255)
                                                       aCTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATggg                                                                                            <  1:8444925/149‑1 (MQ=255)
                                                       aCTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATggg                                                                                            >  2:8272978/1‑149 (MQ=255)
                                                         tAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGcc                                                                                          >  2:5934341/1‑149 (MQ=255)
                                                            cATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCAcc                                                                                       >  1:6131357/1‑149 (MQ=255)
                                                                aGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCaaa                                                                                   >  1:6247575/1‑149 (MQ=255)
                                                                 gAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAAt                                                                                  >  2:2489932/1‑149 (MQ=255)
                                                                   aTCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAAttg                                                                                <  1:4055336/149‑1 (MQ=255)
                                                                   aTCAGTGGATGGACTTCTTTCCGTAGAAGGCAGATTCTTCTCAAACCTAACAAGAAAACTTATTAATACTGATGATGTTACTATCAAGGACCAACTAAAAATGTTGGTTATGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAAttg                                                                                <  2:4327348/149‑1 (MQ=37)
                                                                      aGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAAttgttg                                                                             >  1:303693/1‑149 (MQ=255)
                                                                        tggatgtaCTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTGAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGt                                                                           <  2:5784016/149‑1 (MQ=255)
                                                                        tggatggaCTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGt                                                                           <  1:1909159/149‑1 (MQ=255)
                                                                         ggatggaCTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGtt                                                                          <  1:4861157/149‑1 (MQ=255)
                                                                          gatggaCTTCTTTCCGTAGAAGGCGGATTCTTCTCAACCCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGttt                                                                         <  2:9160753/149‑1 (MQ=255)
                                                                           atggaCTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGtttt                                                                        >  1:755354/1‑149 (MQ=255)
                                                                            tggaCTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTg                                                                       <  1:4226426/149‑1 (MQ=255)
                                                                             ggaCTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTgg                                                                      >  2:7141329/1‑149 (MQ=255)
                                                                              gaCTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTggg                                                                     <  2:5553262/149‑1 (MQ=255)
                                                                               aCTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGc                                                                    <  2:7524989/149‑1 (MQ=255)
                                                                                cttcttTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGcc                                                                   <  1:4323914/149‑1 (MQ=255)
                                                                                 ttcttTCCGTAGAAGGCGGACTCTTCTCAAACCTAACAGGAAAACTTATTAATAATTATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGccc                                                                  <  1:1018053/149‑1 (MQ=255)
                                                                                   cttTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCAt                                                                >  2:8115855/1‑149 (MQ=255)
                                                                                   cttTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCAt                                                                <  2:7797437/149‑1 (MQ=255)
                                                                                   cttTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCAt                                                                >  2:6866628/1‑149 (MQ=255)
                                                                                    tttCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATc                                                               <  2:7330124/149‑1 (MQ=255)
                                                                                     ttCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCa                                                              >  1:779540/1‑149 (MQ=255)
                                                                                      tCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTGGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCAc                                                             <  1:1786521/149‑1 (MQ=255)
                                                                                       ccGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGATTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGGCCATCACt                                                            >  1:6873020/1‑149 (MQ=255)
                                                                                           aGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACtttat                                                        <  1:2802244/149‑1 (MQ=255)
                                                                                            gAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACtttatt                                                       <  1:125034/149‑1 (MQ=255)
                                                                                             aaGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGTGCCCATCACtttattt                                                      <  2:3804697/149‑1 (MQ=255)
                                                                                              aGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACtttattta                                                     >  2:8928734/1‑149 (MQ=255)
                                                                                              aGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACtttattta                                                     <  2:4137868/149‑1 (MQ=255)
                                                                                                gCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACt                                                   >  2:6535798/1‑149 (MQ=255)
                                                                                                 cGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACtt                                                  >  2:6670464/1‑149 (MQ=255)
                                                                                                  ggATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACttt                                                 <  1:7178269/149‑1 (MQ=255)
                                                                                                    aTTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACttttt                                               <  1:8366502/149‑1 (MQ=255)
                                                                                                        ttctCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTgggg                                           >  1:4559966/1‑149 (MQ=255)
                                                                                                         tctcAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGggt                                          >  2:454945/1‑149 (MQ=255)
                                                                                                           tcAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGggttt                                        <  2:3250261/149‑1 (MQ=255)
                                                                                                           tcAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGggttt                                        >  2:7651280/1‑149 (MQ=255)
                                                                                                            cAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGggtttt                                       <  2:6314143/149‑1 (MQ=255)
                                                                                                             aaaCCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGggttttg                                      <  1:4999347/149‑1 (MQ=255)
                                                                                                              aaCCTAACAGGAAAACTTATTAATAATGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTATTTTTTGGggttttgg                                     >  2:5049525/1‑149 (MQ=255)
                                                                                                               aCCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGggttttggt                                    <  1:8684702/149‑1 (MQ=255)
                                                                                                               aCCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGggttttggt                                    >  1:6981513/1‑149 (MQ=255)
                                                                                                                    aCAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTttct                               >  1:6434103/1‑149 (MQ=255)
                                                                                                                     cAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTttctt                              <  2:2766141/149‑1 (MQ=255)
                                                                                                                      aGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTttcttc                             >  2:8367704/1‑149 (MQ=255)
                                                                                                                      aGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTttcttc                             <  1:8024041/149‑1 (MQ=255)
                                                                                                                       ggAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTtcttct                            >  1:2500145/1‑149 (MQ=255)
                                                                                                                       ggAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTtcttct                            >  2:1508710/1‑149 (MQ=255)
                                                                                                                          aaaCTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCAc                         >  1:3155041/1‑149 (MQ=255)
                                                                                                                            aCTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACta                       >  1:1149011/1‑149 (MQ=255)
                                                                                                                            aCTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACta                       <  2:7029031/149‑1 (MQ=255)
                                                                                                                            aCTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACta                       <  1:8975310/149‑1 (MQ=255)
                                                                                                                               tattaATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAg                    >  1:1510055/1‑149 (MQ=255)
                                                                                                                               tattaATACGGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAg                    <  1:2088761/149‑1 (MQ=255)
                                                                                                                                 ttaATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTc                  >  1:6005634/1‑149 (MQ=255)
                                                                                                                                   aaTACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCtt                <  1:7662073/149‑1 (MQ=255)
                                                                                                                                    aTACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCttt               <  2:6099619/149‑1 (MQ=40)
                                                                                                                                      aCTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCa             <  2:2564844/149‑1 (MQ=39)
                                                                                                                                        tgatgaTGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCAtt           <  2:3679469/149‑1 (MQ=38)
                                                                                                                                         gatgatGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCATTc          <  2:5225868/149‑1 (MQ=37)
                                                                                                                                         gatgatGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCATTc          >  2:2987966/1‑149 (MQ=37)
                                                                                                                                          atgatgTTACTGTCAAGGGCCATCTAAACATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCATTCt         <  1:6310715/149‑1 (MQ=25)
                                                                                                                                          atgatgTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCATTCt         <  2:5380830/149‑1 (MQ=35)
                                                                                                                                          atgatgTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCATCCt         >  2:3436522/1‑149 (MQ=25)
                                                                                                                                             atgTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCATTCtata      >  1:2279945/1‑149 (MQ=33)
                                                                                                                                                 tACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCATTCTATAAGAt  >  1:5783175/1‑149 (MQ=11)
                                                                                                                                                    |                                                                                                                                                 
CAGAAATTAAGGGTGCTTTAACTTATGAAGATAAAGTTGTGCAAAAGATTGTAGGACTAGCATTAGAATCAGTGGATGGACTTCTTTCCGTAGAAGGCGGATTCTTCTCAAACCTAACAGGAAAACTTATTAATACTGATGATGTTACTGTCAAGGGCCATCTAAAAATGTTGGTTTTGGGTCATTGAAAATGTAGGAAATGGGCCACCCAAATTGTTGGTTTTGGGCCCATCACTTTATTTACTTTTTGGGGTTTTGGTTTTCTTCTCACTATAGTCTTTCATTCTATAAGAT  >  AM406671/1229215‑1229508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.