| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,007,288 | C→T | F230F (TTC→TTT) | bglP → | similar to PTS system, beta‑glucosides specific enzyme IIABC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,007,288 | 0 | C | T | 99.9% | 3505.4 / NA | 892 | F230F (TTC→TTT) | bglP | similar to PTS system, beta‑glucosides specific enzyme IIABC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (443/447); minor base G (1/0); total (445/447) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 892 total aligned reads displayed.
GCACTTGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTCGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGCGTTAG > AM406671/1007142‑1007433 | gcaCTTGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTGAGCATCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGc > 2:5801313/1‑149 (MQ=255)gcaCTTGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGc < 2:8246677/149‑1 (MQ=255) tGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTAGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCt > 1:4715998/1‑149 (MQ=255) gTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCtt > 1:4326589/1‑149 (MQ=255) tttATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCttt > 1:8974886/1‑149 (MQ=255) tttATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCttt < 1:2726875/149‑1 (MQ=255) tATCCAGGTTTCGTAGATGGAACTGTCGNAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATGGCCATTACAGCATTTGCAGCCttttt > 1:5136812/1‑149 (MQ=255) aTCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTa < 1:9227979/149‑1 (MQ=255) ccAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGa < 1:1824509/149‑1 (MQ=255) ccAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGa < 1:5835199/149‑1 (MQ=255) cAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGaa < 2:8740397/149‑1 (MQ=255) cAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGaa > 1:8564220/1‑149 (MQ=255) cAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGaa > 1:602936/1‑149 (MQ=255) gTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAacac < 2:1688567/149‑1 (MQ=255) ttCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCa < 2:7034912/149‑1 (MQ=255) cGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGt < 2:7819840/149‑1 (MQ=255) tAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTa > 1:6449525/1‑149 (MQ=255) tAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTa < 1:2653389/149‑1 (MQ=255) aGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTaa > 2:1149132/1‑149 (MQ=255) aGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTaa > 2:1920816/1‑149 (MQ=255) gATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTaaa > 2:2816753/1‑149 (MQ=255) tGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGa < 2:3633290/149‑1 (MQ=255) ggAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGaa > 2:6513069/1‑149 (MQ=255) gAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTATCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCGGCTCAAGaaa > 2:4615056/1‑149 (MQ=255) aaCTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGaaaa < 1:4895241/149‑1 (MQ=255) aaCTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGaaaa > 1:7236745/1‑149 (MQ=255) aaCTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGaaaa < 1:4041699/149‑1 (MQ=255) tGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAatta < 2:6004550/149‑1 (MQ=255) cgTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGATATGGTTCATCTGTAATGCCAATGATTGCCATTACAGCATTGGCAGCCTTTTTAGAACACCAGTTAAAGAAAatta > 2:2448105/2‑149 (MQ=255) gTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAattat > 1:5361821/1‑149 (MQ=255) tCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAattatt > 2:1809420/1‑149 (MQ=255) gCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTCGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTcc < 1:5655001/149‑1 (MQ=255) aaaCATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGAt > 1:1597171/1‑149 (MQ=255) aaaCATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGAt > 2:5578223/1‑149 (MQ=255) aaaCATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTACTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACGCCAGTTAAAGAAAATTATTCCTGAt < 2:5032814/149‑1 (MQ=255) aaCATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATg > 1:7901262/1‑149 (MQ=255) aCATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCttt < 2:3043706/114‑1 (MQ=255) aCATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGt < 2:4112796/149‑1 (MQ=255) ttGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTc > 2:26257/1‑149 (MQ=255) aGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACtttt > 1:6998407/1‑149 (MQ=255) aGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACtttt < 2:7481969/149‑1 (MQ=255) tggtggGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCt < 1:504994/149‑1 (MQ=255) ggTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGacac < 1:3043925/149‑1 (MQ=255) gTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACAcc < 1:6815309/149‑1 (MQ=255) tAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCa > 2:1307579/1‑149 (MQ=255) gCCTCTTTGGGATACCGGTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTc > 1:3527621/1‑149 (MQ=255) ccTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCt > 2:8560991/1‑149 (MQ=255) ccTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCt < 1:8376295/149‑1 (MQ=255) ctctTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCtt < 1:1323399/149‑1 (MQ=255) ttttGGGAGACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTa < 2:3401347/148‑1 (MQ=255) ctTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTa > 2:8347019/1‑149 (MQ=255) ttGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACg > 1:7098701/1‑149 (MQ=255) ttGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACg > 1:7411255/1‑149 (MQ=255) tGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACgg < 2:3797387/149‑1 (MQ=255) tGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACgg < 1:6586643/149‑1 (MQ=255) gggATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGc > 2:4239623/1‑149 (MQ=255) ggATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCg > 2:1052943/1‑149 (MQ=255) ggATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCg < 1:1042595/149‑1 (MQ=255) ccGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTAt < 1:8674146/149‑1 (MQ=255) ttCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTAtctc > 1:4570873/1‑149 (MQ=255) tctcAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCa > 1:3754347/1‑149 (MQ=255) tctcAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCa > 2:8421899/1‑149 (MQ=255) tctcAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGAGGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCa < 2:7642290/149‑1 (MQ=255) gTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTcc > 1:7649884/1‑149 (MQ=255) tACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCTATTCct > 2:7118800/1‑149 (MQ=255) tACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCct < 1:7801736/149‑1 (MQ=255) tACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCct > 2:8922284/1‑149 (MQ=255) cAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTg > 1:8155573/1‑149 (MQ=255) aCAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTggg < 1:6239896/149‑1 (MQ=255) cAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGc < 2:525930/149‑1 (MQ=255) ggTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCt < 1:9027105/149‑1 (MQ=255) gTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTa < 2:8172768/149‑1 (MQ=255) ttATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAg > 1:2069519/1‑149 (MQ=255) ttATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAg < 2:7299399/149‑1 (MQ=255) tGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTATTTTATTTGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTa > 2:2104028/1‑149 (MQ=255) gTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTAtt < 1:5469768/149‑1 (MQ=255) gTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTAtt > 2:6250235/1‑149 (MQ=255) ttCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAATATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTg < 2:6112538/149‑1 (MQ=255) ttCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTg > 2:4838759/1‑149 (MQ=255) ttCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTg < 2:917252/149‑1 (MQ=255) tCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGAGACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCGTCCTAGTTATTgg > 1:4480873/1‑149 (MQ=255) tCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTgg < 1:1895377/149‑1 (MQ=255) cATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGa < 2:4404352/149‑1 (MQ=255) aTCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGAc > 1:2208869/1‑149 (MQ=255) gTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGt < 2:218447/149‑1 (MQ=255) aaTTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAAcc < 1:8756475/149‑1 (MQ=255) attattGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCt > 2:7952423/1‑149 (MQ=255) attattGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCt > 2:807155/1‑149 (MQ=255) attattGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCt > 1:3385119/1‑149 (MQ=255) attattGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCt < 1:8259039/149‑1 (MQ=255) tattGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTg > 1:2413918/1‑149 (MQ=255) tGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCtt < 2:6857181/149‑1 (MQ=255) tGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCtt < 2:6358754/149‑1 (MQ=255) cATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAg < 1:8066424/149‑1 (MQ=255) aTTACAGCATTTGCAGCCTTTTTATAATACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGa > 2:6687400/1‑149 (MQ=255) ttACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATATAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTCTTGGACCAGTGATGAACCTTGCTTCAGAt > 2:5365939/1‑149 (MQ=255) aCAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGc > 1:2857216/1‑149 (MQ=255) gCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGCGtt > 1:5258716/1‑149 (MQ=255) cATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGCGTTa < 1:2936458/149‑1 (MQ=255) cATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGCGTTa < 2:3167049/149‑1 (MQ=255) | GCACTTGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTCGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGCGTTAG > AM406671/1007142‑1007433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |