Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | AM406671 | 1,277,684 | T→A | N231I (AAT→ATT) | llmg_1306 ← | conserved hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AM406671 | 1,277,684 | 0 | T | A | 99.9% | 3541.2 / NA | 904 | N231I (AAT→ATT) | llmg_1306 | conserved hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (433/470); minor base C (1/0); total (434/470) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.80e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 904 total aligned reads displayed.
CTGAATTTTGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCATTAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCTTTCAGGCC > AM406671/1277538‑1277829 | tGAATTTTGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATaa > 2:8059202/1‑149 (MQ=255) tttGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGaa > 2:3731617/1‑149 (MQ=255) tGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAACAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTAGTTGTCTCAATAAAAGAAcc > 2:6035567/1‑149 (MQ=255) ttttACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAggg < 1:8446724/149‑1 (MQ=255) tttACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGt < 1:3225983/149‑1 (MQ=255) ttAATCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGtt < 2:763887/149‑1 (MQ=255) aCTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTc > 2:6691176/1‑149 (MQ=255) tCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCt < 1:1614951/149‑1 (MQ=255) tCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCt < 1:1509514/149‑1 (MQ=255) tCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCt > 1:2717478/1‑149 (MQ=255) tCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCt < 2:3427402/149‑1 (MQ=255) cGTATCTAACCATGCAATTTGGCTCCAATGTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTa > 2:5654854/1‑149 (MQ=255) gTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAg > 1:2011447/1‑149 (MQ=255) tATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGa < 1:6710199/149‑1 (MQ=255) tATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGa > 1:719731/1‑149 (MQ=255) aTCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAt < 1:5831524/149‑1 (MQ=255) aTCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAt < 1:7369724/149‑1 (MQ=255) aTCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAt > 2:7098013/1‑149 (MQ=255) aTCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAt > 2:7883622/1‑149 (MQ=255) aTCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTAAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTAGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAt > 2:8770578/1‑149 (MQ=255) cTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGCTTCCTAGAtgg > 2:6917451/1‑148 (MQ=255) aaCCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGc < 1:7033916/149‑1 (MQ=255) aaCCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGc > 1:7760380/1‑149 (MQ=255) aCCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGCAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACCATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAACGGGTTTCCTAGATGTGcc > 2:4553610/1‑148 (MQ=255) aCCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCt > 1:3626504/1‑149 (MQ=255) cATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTcc > 1:8608206/1‑149 (MQ=255) cATGCAATTTCGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTcc < 2:3601618/149‑1 (MQ=255) cATGCAATTTCGCTCCAACCTCCTCCAGCAAAACCTGCTTGAGTGGAAAAAGTTACGGTGCGCCCAGAATTACAACGCGGACTATTAGCTGCGGTCGGTGTCGGTGTTGTCTCAATAAAAGAACCGAAAGGGTTCCCTAGATGTGCGcc > 2:3225664/1‑149 (MQ=255) attcAATGTGGCTCCAATCTCCAAAAACAAAACAATCTTCAGTGGAAAAAGATACTGTTAATACAAAATTTAAAAGAGGAATATAAGCTGCCGACGGTGTCGTTGTTGTCTCAATAAAAGAACCGCAAGGGTTTCCTAGATGTGCGCCt < 2:1099302/146‑1 (MQ=255) cAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTa < 1:3128126/149‑1 (MQ=255) aTTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACGATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGCTTCCTAGATGTGCTCCTTGAtt > 1:6473732/1‑149 (MQ=255) ttGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTAtttt < 1:6280964/149‑1 (MQ=255) tGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAANGGTTTCCTAGATGTGCTCCTTTATTTTc < 1:5095803/149‑1 (MQ=255) tGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTc > 1:2319744/1‑149 (MQ=255) tGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTc < 1:4352712/149‑1 (MQ=255) ggCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCa > 2:5081426/1‑149 (MQ=255) ggCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCa < 2:7218156/149‑1 (MQ=255) gCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAAATGTGCTCCTTTATTTTCAg < 2:8985472/149‑1 (MQ=255) tCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAggg > 2:4248347/1‑149 (MQ=255) ccAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGt < 1:4718739/149‑1 (MQ=255) ccAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGt > 1:4211536/1‑149 (MQ=255) ctcCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTAtt > 1:1867990/1‑149 (MQ=255) tcCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTAttt > 2:5864780/1‑149 (MQ=255) ccTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTc > 2:9152416/1‑149 (MQ=255) aGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGc > 1:3850/1‑149 (MQ=255) aaaCCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTaa > 1:8218306/1‑149 (MQ=255) ccTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCt < 1:6837713/149‑1 (MQ=255) tGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTAt > 1:6002777/1‑149 (MQ=255) ttCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGAt < 2:4010475/149‑1 (MQ=255) ttCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGAt < 2:6812705/149‑1 (MQ=255) tGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTatca < 2:2231524/149‑1 (MQ=255) ggAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTatcat < 2:1841100/149‑1 (MQ=255) aaaaGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTatcatcat > 1:7624563/1‑149 (MQ=255) aaaaGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTatcatcat < 1:7462426/149‑1 (MQ=255) aGTTACTGTGCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTCCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATcatcatcat < 2:2584616/149‑1 (MQ=255) ttACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCAGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTa < 2:6350268/149‑1 (MQ=255) aCTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACt < 2:4429016/149‑1 (MQ=255) ccAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTgagg < 2:4662748/149‑1 (MQ=255) cAGAATTTAAAAGCGGACTATTAGCTCCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTgagga < 2:1990048/149‑1 (MQ=255) aGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTgaggag < 1:8311389/149‑1 (MQ=255) aaTTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTa < 2:4148347/149‑1 (MQ=255) aaTTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTa < 2:6202705/149‑1 (MQ=255) tttAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTAtt < 2:7547865/149‑1 (MQ=255) ttAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATACTTACTTTGTTGAGGAGTATTc > 1:1776884/1‑149 (MQ=255) tAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTcc > 1:5357251/1‑149 (MQ=255) aaGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAAt < 2:4955340/149‑1 (MQ=255) aGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATa > 1:4541346/1‑149 (MQ=255) gCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGTAAGGGTGTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAg < 2:162833/149‑1 (MQ=255) gCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAg > 2:3100066/1‑149 (MQ=255) gCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAg < 2:1386023/149‑1 (MQ=255) gCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAg < 2:8314681/149‑1 (MQ=255) cGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAgg < 1:548583/149‑1 (MQ=255) aCTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTAt > 1:2513433/1‑149 (MQ=255) cTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCCTCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATc > 2:6439702/1‑149 (MQ=255) aTTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCaa > 1:9060783/1‑149 (MQ=255) tAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAAt > 2:3854205/1‑149 (MQ=255) cTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTta < 2:4874010/149‑1 (MQ=255) gCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTtata < 1:3991384/149‑1 (MQ=255) gtcggtGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAAcc > 1:804844/1‑149 (MQ=255) gtcggtGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAAcc > 2:5553006/1‑149 (MQ=255) gtcggtGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAAcc < 1:339019/149‑1 (MQ=255) tcggtGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCa > 1:1039325/1‑149 (MQ=255) tcggtGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCa > 1:1216201/1‑149 (MQ=255) ggtGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAAt < 2:2701125/149‑1 (MQ=255) tgtCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAg < 2:8596952/149‑1 (MQ=255) gtCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGc < 1:1345952/149‑1 (MQ=255) tCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCt > 1:2119123/1‑149 (MQ=255) cGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTc < 1:2916310/149‑1 (MQ=255) cGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTc > 2:5426277/1‑149 (MQ=255) cGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGCATTCCAATAGGTATCAAATTTATAACCACTAGCTc > 2:7989271/1‑149 (MQ=255) tgttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCtt > 1:918943/1‑149 (MQ=255) tgttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCtt > 1:5646916/1‑149 (MQ=255) gttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCttt < 2:7442659/149‑1 (MQ=255) gttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCttt < 2:2937591/149‑1 (MQ=255) gttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCttt < 1:8852988/149‑1 (MQ=255) gttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCttt < 2:5245932/149‑1 (MQ=255) ttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCTTTc > 2:2824788/1‑149 (MQ=255) ttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCTTTc > 1:7913507/1‑149 (MQ=255) ttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCTTTc > 1:4841355/1‑149 (MQ=255) ttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCTTTc < 1:4989569/149‑1 (MQ=255) | CTGAATTTTGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCATTAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCTTTCAGGCC > AM406671/1277538‑1277829 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |