| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,532,424 | G→C | P159R (CCC→CGC) | llmg_1560 ← | stress induced DNA binding protein (putative) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,532,424 | 0 | G | C | 99.6% | 3727.1 / NA | 915 | P159R (CCC→CGC) | llmg_1560 | stress induced DNA binding protein (putative) |
| Reads supporting (aligned to +/- strand): ref base G (1/1); major base C (439/470); minor base T (3/1); total (443/472) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 915 total aligned reads displayed.
AGCAAGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGGGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGCTTC > AM406671/1532278‑1532569 | aaGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGaata < 2:7830729/149‑1 (MQ=255) aGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGaataa > 1:5956560/1‑149 (MQ=255) aGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGaataa < 2:2795083/149‑1 (MQ=255) aGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGaataa < 2:7699988/149‑1 (MQ=255) aGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGaataa > 2:7443148/1‑149 (MQ=255) tCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAAGCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAg < 2:5787952/149‑1 (MQ=255) tCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACa > 1:3138290/1‑149 (MQ=255) ggACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAAt < 2:206824/149‑1 (MQ=255) ggACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAAt < 2:3914944/149‑1 (MQ=255) gACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAAtt > 1:3085682/1‑149 (MQ=255) aCTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATta < 2:7603137/149‑1 (MQ=255) cTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCGAAATAGCGAATAATAGACAAATtat < 2:5054705/149‑1 (MQ=255) cTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGAGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGCTTTTCCAAGTTCTCCTGCAAAATAGCGAATACTAGACTAATtat > 2:1569941/1‑149 (MQ=255) tCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATtata > 2:4118730/1‑149 (MQ=255) tCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATtata < 2:666165/149‑1 (MQ=255) cAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGAGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAg > 2:1146737/1‑149 (MQ=255) aGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTaa < 1:8204547/149‑1 (MQ=255) aaaGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCtt < 1:7094/149‑1 (MQ=255) aGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGc < 1:2707173/149‑1 (MQ=255) gggACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGaa < 1:7712683/149‑1 (MQ=255) ggACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAAt > 1:8677364/1‑149 (MQ=255) aCTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTg > 2:5610793/1‑149 (MQ=255) cTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGc < 2:6987478/149‑1 (MQ=255) cTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGc < 1:2572686/149‑1 (MQ=255) tAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCa < 2:3647920/149‑1 (MQ=255) tAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCa < 1:997440/149‑1 (MQ=255) cTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGt > 2:531455/1‑149 (MQ=255) gATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCt > 1:8422927/1‑149 (MQ=255) gATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCt < 1:3684937/149‑1 (MQ=255) aTGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTa < 1:3881491/149‑1 (MQ=255) aTGGTGGTCACTTAAATGCTCATCAAAATCTTTAATATTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCAAATAATAGACAAATTATAGACGTAAAGCTTGCGAATTGCAAGTTCTAAGGTa > 2:4959418/1‑149 (MQ=255) tggtggTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTaa > 1:436155/1‑149 (MQ=255) ggtggtCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTaaa < 2:3522656/149‑1 (MQ=255) gtggtCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAAt < 1:7551395/149‑1 (MQ=255) ggtCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAAttt < 2:8004554/149‑1 (MQ=255) tCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCACTAAATTCGCCTATCGTTTTTCCAAGTTCTCCTTCAAAATAGCGAATAATAGACAAATTATACCCGTAAAGCTTGCGAATTGCAAGTTATAAGCTAAAttttt > 2:4424704/1‑149 (MQ=255) tCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAAttttt < 2:9144689/149‑1 (MQ=255) cACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTttc < 1:4957391/149‑1 (MQ=255) cACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTttc > 2:6303834/1‑149 (MQ=255) tAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTcc > 1:4060053/1‑149 (MQ=255) aaTGCTCATCAAAATCTTTAATCTTCACCTTCCTCCCCAATACAGGCGCCTATCGCTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGCCAAATTACAGCCGTACAGCTCGCGAATTGCAAGGTCTAAGCTAAATTTTTCTGCCta < 2:3796602/149‑2 (MQ=255) aTGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTTTTTTTTTTTCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCttt > 2:3328297/1‑149 (MQ=255) aTGCTCATCAAAATATTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCttt < 1:5680259/149‑1 (MQ=255) tGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCtttt > 2:8382260/1‑149 (MQ=255) gCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTg < 2:2567612/149‑1 (MQ=255) cTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTgc < 2:4673810/149‑1 (MQ=255) cTCATCAAAATCTTTAATCTTCATCCTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTgc < 1:5467871/149‑1 (MQ=255) tcatcaAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTgcg > 2:310099/1‑149 (MQ=255) tcaAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAAt < 1:8088015/89‑1 (MQ=255) caAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAg < 1:7235142/149‑1 (MQ=255) aaaaTCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGt < 2:8807707/149‑1 (MQ=255) aaTCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGttt < 1:451850/149‑1 (MQ=255) aTCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTa < 2:3225014/149‑1 (MQ=255) aTCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTa > 1:7346823/1‑149 (MQ=255) tCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTaa < 1:9251742/149‑1 (MQ=255) tCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTaa > 2:4784373/1‑149 (MQ=255) ttAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCTTTGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCg > 2:2406148/1‑149 (MQ=255) ttAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCg > 1:1848154/1‑149 (MQ=255) tAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGc > 1:4663722/1‑149 (MQ=255) aaTCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCt > 2:7886131/1‑149 (MQ=255) aaTCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCt > 2:1317706/1‑149 (MQ=255) atcttcatcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTc < 2:687874/149‑1 (MQ=255) tcttcatcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCg > 2:1745529/1‑149 (MQ=255) cttcatcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTATGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGt > 2:6510084/1‑149 (MQ=255) tcatcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTcc > 2:1933290/1‑149 (MQ=255) catcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCg < 1:5289259/149‑1 (MQ=255) atcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGa > 1:5145609/1‑149 (MQ=255) ttgctcctcAATACATTCGCGTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATGATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTGTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGataa < 2:7286194/146‑1 (MQ=255) ttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGataa > 1:2318212/1‑149 (MQ=255) ttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGataa < 2:5944238/149‑1 (MQ=255) ttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGataa > 2:8999825/1‑149 (MQ=255) cctcctCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTATCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGataaat > 1:6612302/1‑149 (MQ=255) ctcctcAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGataaata < 2:2947056/149‑1 (MQ=255) ctcctcAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGataaata > 1:3511798/1‑149 (MQ=255) cctcAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATGATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGAtaaataaa < 2:4281527/149‑1 (MQ=255) cAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAAttt < 2:1403262/149‑1 (MQ=255) cAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAAttt > 1:8864062/1‑149 (MQ=255) aaTAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAAtttt < 2:2212272/149‑1 (MQ=255) aaaTTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGt < 1:1420761/149‑1 (MQ=255) aaaTTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGt > 1:645638/1‑149 (MQ=255) gCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGaa > 1:7895087/1‑149 (MQ=255) ccTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGaaa < 1:1034258/149‑1 (MQ=255) cTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGaaaa > 1:3309812/1‑149 (MQ=255) aTCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATc > 1:4874769/1‑149 (MQ=255) tCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTTGTTCTGAAAATCa < 1:2084025/149‑1 (MQ=255) tttttCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTg > 1:8257971/1‑149 (MQ=255) ccAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATaaa > 1:1213104/1‑149 (MQ=255) ccAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATaaa > 1:6747528/1‑149 (MQ=255) ccAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATaaa > 2:64236/1‑149 (MQ=255) cAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAg > 2:8139204/1‑149 (MQ=255) aGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCGAGTTTCATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGtt > 2:5430629/1‑149 (MQ=255) ttCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGtttt < 2:8600166/149‑1 (MQ=255) ctcCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCt < 2:5228690/149‑1 (MQ=255) cTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATc < 2:615876/149‑1 (MQ=255) tGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCa < 1:6915373/149‑1 (MQ=255) tGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCa > 1:6219662/1‑149 (MQ=255) gCAAAATAGCCAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCaa < 1:6308918/149‑1 (MQ=255) aaTAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGCt > 1:157400/1‑149 (MQ=255) aTAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGCtt > 1:8951390/1‑149 (MQ=255) aTAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGCtt > 1:2901042/1‑149 (MQ=255) | AGCAAGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGGGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGCTTC > AM406671/1532278‑1532569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |