| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,942,432 | T→C | I80V (ATC→GTC) | llmg_1960 ← | hypothetical protein predicted by Glimmer/Critica |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,942,432 | 0 | T | C | 99.6% | 4488.2 / NA | 1107 | I80V (ATC→GTC) | llmg_1960 | hypothetical protein predicted by Glimmer/Critica |
| Reads supporting (aligned to +/- strand): ref base T (0/1); major base C (605/494); minor base A (3/2); total (609/498) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1107 total aligned reads displayed.
TTTTCGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGATTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCAATAATA > AM406671/1942286‑1942577 | ttCGATTTTTAATTTCTTTAGTAATCGCGAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAg < 2:5290002/149‑1 (MQ=255) tCGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTCAGTAGCGTCGTAAATCGAACAAGCTGACGCGGTGTTGTGCTTCTTTTGCCTAAgg > 1:245567/1‑149 (MQ=255) gATTTTTAATTTCCTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTc < 1:5015042/149‑1 (MQ=255) tttttAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTg < 2:5934419/149‑1 (MQ=255) tttAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTc > 1:2213116/1‑149 (MQ=255) tttAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTc < 2:7593267/149‑1 (MQ=255) ttAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTcc > 1:568035/1‑149 (MQ=255) aTTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATGGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTATATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCaa < 1:5978426/149‑1 (MQ=255) tCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATa < 1:9097703/149‑1 (MQ=255) cTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATAc > 2:6249070/1‑149 (MQ=255) cTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATAc > 2:5617078/1‑149 (MQ=255) cTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATAc > 2:6668005/1‑149 (MQ=255) tAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGt > 1:8088481/1‑149 (MQ=255) aGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTa > 2:9050507/1‑149 (MQ=255) tAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTATATCGAACAAGCTGACGCGTTGTTTTACCCCTTTTGACTAAGTTCTGCCACAAATACAATAAc > 1:98990/1‑149 (MQ=255) tAATCGCTAAATAGAGCGGTAAAACCGGCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAAc < 2:7243262/149‑1 (MQ=255) aaTCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTATGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACa < 2:2532899/149‑1 (MQ=255) aTCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACaa > 2:8084948/1‑149 (MQ=255) tCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAAt < 2:2319570/149‑1 (MQ=255) cTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCt > 2:3350416/1‑149 (MQ=255) cTAAATAAAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAATCGGACGCGTTGATGTACTGCTTTCTACTAAGCCCAGTCCCAAATACTATAACAATCCt > 2:3538338/1‑149 (MQ=255) aaaTAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGt > 1:4685556/1‑149 (MQ=255) aaaTAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGt > 1:5442660/1‑149 (MQ=255) aaaTAAAACTGTAAAACAGAAAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCTAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGt < 2:2169826/149‑1 (MQ=255) aTAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGttt > 2:7791289/1‑149 (MQ=255) aTAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGttt > 1:6748472/1‑149 (MQ=255) aTAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGttc > 1:449863/1‑148 (MQ=255) tAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTc < 1:3612573/149‑1 (MQ=255) tAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTc < 1:3792540/149‑1 (MQ=255) agagCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTcc > 2:6065470/1‑149 (MQ=255) gCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTa < 2:200448/149‑1 (MQ=255) aaaaCCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAacc < 1:7035012/149‑1 (MQ=255) cGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCaa < 2:3782313/149‑1 (MQ=255) cGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCaa < 2:7380163/149‑1 (MQ=255) gTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAAt > 2:450355/1‑149 (MQ=255) cAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTa > 1:1372532/1‑149 (MQ=255) aaaaTTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTAc > 1:7123254/1‑149 (MQ=255) aTTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAg > 2:1238186/1‑149 (MQ=255) aTTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGGTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTGTCCTTAAAACCACCAATTACaaa > 2:4693424/1‑148 (MQ=255) tGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCGTTAAAACCACCAATTACAAGCa > 2:3160812/1‑149 (MQ=255) gTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCCAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCAt > 1:7443154/1‑149 (MQ=255) ttAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATc > 2:2750183/1‑149 (MQ=255) tAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCa > 1:2635142/1‑149 (MQ=255) aTCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCt < 2:5469021/92‑1 (MQ=255) aTCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATc < 2:6518524/149‑1 (MQ=255) tCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATcc < 2:8853139/149‑1 (MQ=255) tCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATcc < 1:5550743/149‑1 (MQ=255) cGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCt > 2:4231956/1‑149 (MQ=255) gTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTg < 2:2950015/149‑1 (MQ=255) gTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTg < 2:7014889/149‑1 (MQ=255) ttGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGATGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCACTCCTGaa > 2:3638701/1‑149 (MQ=255) gTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAAc < 1:101983/149‑1 (MQ=255) aaaaaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCg > 2:6850788/1‑149 (MQ=255) cGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATg < 1:8472109/149‑1 (MQ=255) ggCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGa < 1:1671444/149‑1 (MQ=255) ggCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGa > 1:8929824/1‑149 (MQ=255) ggCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGa > 1:6388068/1‑149 (MQ=255) cTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACa < 1:4077610/149‑1 (MQ=255) tAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACAt < 1:4380912/149‑1 (MQ=255) tAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACAt > 1:8805901/1‑149 (MQ=255) aaaaaGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCGAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATg < 2:5739784/149‑1 (MQ=255) aagaagGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATa < 1:1247205/149‑1 (MQ=255) agaagGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATaa > 2:1409128/1‑149 (MQ=255) agaagGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATaa > 2:398781/1‑149 (MQ=255) gaagGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAAt < 1:2030479/149‑1 (MQ=255) aagGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCATTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAAtt > 2:4998279/1‑149 (MQ=255) agGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTg < 1:4263038/149‑1 (MQ=255) ggTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGa > 2:1685023/1‑149 (MQ=255) ggTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGa < 1:6922126/149‑1 (MQ=255) ggTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGa < 1:2752793/149‑1 (MQ=255) ggTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGa > 1:1857599/1‑149 (MQ=255) aGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGaaaaa < 1:6203741/149‑1 (MQ=255) gTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGaaaaaa > 1:821235/1‑149 (MQ=255) tAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAAc < 1:8568078/149‑1 (MQ=255) aGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACg > 1:3484548/1‑149 (MQ=255) gtcgtAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGt < 2:6334660/149‑1 (MQ=255) gtAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGt < 1:5830689/149‑1 (MQ=255) tAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTc < 1:1517528/149‑1 (MQ=255) cGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTcc > 2:7938384/1‑149 (MQ=255) aaCAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCAc < 1:4816291/149‑1 (MQ=255) aaCAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCAc > 1:4187862/1‑149 (MQ=255) aaCAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCAc > 1:7671215/1‑149 (MQ=255) aGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCaa < 1:1141332/149‑1 (MQ=255) gCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCaaa > 1:2154202/1‑149 (MQ=255) aCGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTACTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGAAATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTaa > 2:9193438/1‑149 (MQ=255) cgcgTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAAt < 2:8590125/149‑1 (MQ=255) ttgttgTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCa > 1:8372/1‑149 (MQ=255) tgttgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaa > 1:3882691/1‑149 (MQ=255) tgttgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaa > 2:8188374/1‑149 (MQ=255) gttgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaat < 1:5233862/149‑1 (MQ=255) gttgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaat > 2:1841134/1‑149 (MQ=255) ttgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaata > 2:4862816/1‑149 (MQ=255) ttgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaata > 1:2902902/1‑149 (MQ=255) gtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaataat < 1:7848572/149‑1 (MQ=255) tACTTCTTTTGACTAAGGTCTGTCCCGAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAAtt > 1:655930/1‑149 (MQ=255) aCTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTg < 1:3121680/149‑1 (MQ=255) ttcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACAAGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCa < 2:8422495/149‑1 (MQ=255) tcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCaa > 1:725983/1‑149 (MQ=255) cttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCaat < 1:3350569/149‑1 (MQ=255) cttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCaat < 1:9197343/149‑1 (MQ=255) | TTTTCGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGATTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCAATAATA > AM406671/1942286‑1942577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |