| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,942,730 | C→A | intergenic (‑61/+328) | llmg_1960 ← / ← tenA | hypothetical protein predicted by Glimmer/Critica/transcriptional activator TenA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,942,730 | 0 | C | A | 99.8% | 4096.4 / ‑4.7 | 1054 | intergenic (‑61/+328) | llmg_1960/tenA | hypothetical protein predicted by Glimmer/Critica/transcriptional activator TenA |
| Reads supporting (aligned to +/- strand): ref base C (0/1); major base A (469/581); minor base G (1/1); total (471/583) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1054 total aligned reads displayed.
ATCAGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATACCAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCTGAA > AM406671/1942584‑1942875 | aGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTg > 1:3121407/1‑149 (MQ=255) gAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGGTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGa > 1:4707011/1‑149 (MQ=255) gAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGa < 1:194934/149‑1 (MQ=255) aaaaaCTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGAc > 2:5259386/1‑149 (MQ=255) aaaaCTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACa < 1:2622718/149‑1 (MQ=255) aaCTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAg < 1:8188374/149‑1 (MQ=255) aCTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGc < 2:3250415/149‑1 (MQ=255) tttGTCCACTAGAACCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTGTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCtt < 2:2405055/149‑1 (MQ=255) ttGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCttt < 1:3467685/149‑1 (MQ=255) tGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCtttt < 2:6904543/149‑1 (MQ=255) tCCACTAGAAACCAGTTTTTATTGTCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCtttttt > 2:6719456/1‑148 (MQ=255) cACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTtctc < 2:7640495/149‑1 (MQ=255) cTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCAc > 2:1271806/1‑149 (MQ=255) tAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACATTGACAAGCTTTTTGTCACt > 2:6531067/1‑149 (MQ=255) tAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACt > 2:7206474/1‑149 (MQ=255) aaaCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTaa > 1:8618144/1‑149 (MQ=255) aaaCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTaa > 1:1417591/1‑149 (MQ=255) aaCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTaaa < 2:7081515/149‑1 (MQ=255) aCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTaaaa > 2:3415748/1‑149 (MQ=255) aGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCg < 1:2854182/149‑1 (MQ=255) tttttAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGaa < 2:8435439/149‑1 (MQ=255) tttAATGGCCGTCCAGATTTTTTGGTTTTCGCTCTGAGTAGCTGAATGTTACACTACTTCTCCTATCTCGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAatt > 2:415395/1‑149 (MQ=255) tttAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAatt < 2:219286/149‑1 (MQ=255) ttAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAatta > 2:2820776/1‑149 (MQ=255) aaTGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAattatt < 1:1019076/149‑1 (MQ=255) aTGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCAGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCATTTTAAAGCGAATTAttt > 2:7853423/1‑149 (MQ=255) ggCCGTCCATATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTc < 2:1982763/149‑1 (MQ=255) gCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACtt > 2:1433301/1‑131 (MQ=255) ccGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCaa > 1:6912246/1‑149 (MQ=255) cGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAg > 2:7530364/1‑149 (MQ=255) tCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTg > 1:6598701/1‑149 (MQ=255) ccAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGa < 2:8039469/149‑1 (MQ=255) ccAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGa < 1:8847641/149‑1 (MQ=255) gATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCGTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACa > 1:1870523/1‑149 (MQ=255) tttttGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCt < 2:6197579/149‑1 (MQ=255) ttttGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCtt < 1:113182/149‑1 (MQ=255) tttGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTg < 1:2295348/149‑1 (MQ=255) tGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGAc > 1:5820660/1‑149 (MQ=255) ggTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACt < 2:5893151/149‑1 (MQ=255) aTTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCaa < 1:7407805/149‑1 (MQ=255) aTTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCaa < 2:5492595/149‑1 (MQ=255) ttCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAAt < 2:2648517/149‑1 (MQ=255) gcTGAGTATCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAACTATAACATCTAGAGATAACAGTGACAAGCTTTTTCTCACTTAAAGGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGAtt < 2:5120390/149‑1 (MQ=255) gTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCatta < 1:667597/149‑1 (MQ=255) aGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCattatt < 2:7419398/149‑1 (MQ=255) cTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTAtttt > 2:3709122/1‑149 (MQ=255) gAATGTTCCACTGCTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACCTCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCACGTGAACATCTTGACTCAATAGATTCATTATTTTgt < 2:1868403/149‑2 (MQ=255) gAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGa < 1:7300887/149‑1 (MQ=255) aaTGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGAc < 1:545527/149‑1 (MQ=255) aTGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACg > 1:5298164/1‑149 (MQ=255) ttCCACTACTTCTCCTAACTAGCATATATAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACgaga < 1:6326797/149‑1 (MQ=255) ccACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATa < 2:561851/149‑1 (MQ=255) cACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATaa < 2:2499645/149‑1 (MQ=255) actactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAAt > 1:4970682/1‑149 (MQ=255) actactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAAt < 2:1590323/149‑1 (MQ=255) ctactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAAtt > 1:7175864/1‑148 (MQ=255) tactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCa < 2:4328545/149‑1 (MQ=255) actTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTAtttt > 1:7794518/1‑135 (MQ=255) actTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCAt < 1:3323141/149‑1 (MQ=255) ttCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCAttt < 2:8827305/149‑1 (MQ=255) ttCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCAttt > 1:7908894/1‑149 (MQ=255) ttCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACCTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCAttt < 2:5781737/149‑1 (MQ=255) tcCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTaa > 1:2162860/1‑149 (MQ=255) tcCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTaa < 1:125325/149‑1 (MQ=255) ccTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTaaa < 1:4353402/149‑1 (MQ=255) cTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTaaaa < 2:1101300/149‑1 (MQ=255) cTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTaaaa > 1:8061089/1‑149 (MQ=255) cTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTaaaa > 1:4249950/1‑149 (MQ=255) cTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAtttt > 2:9250548/1‑149 (MQ=255) tAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGGTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTta < 2:2085542/149‑1 (MQ=255) tAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTta < 1:756869/149‑1 (MQ=255) tAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTta > 1:8995956/1‑149 (MQ=255) tAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTta > 2:2948294/1‑149 (MQ=255) aGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTtat < 1:593844/149‑1 (MQ=255) cATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTatat < 2:8947019/149‑1 (MQ=255) cATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTatat > 1:1643851/1‑149 (MQ=255) atatAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGTCTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATAtt < 2:6052613/149‑1 (MQ=255) atatAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATAtt > 2:4065949/1‑149 (MQ=255) tataAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTTTCACTTTAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATAttt > 2:8649037/1‑149 (MQ=255) tataAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGTCTCACTAGATTCATTATTTTGACGAGATAATCATTTTGAAATTTTATAttt > 1:4486027/1‑149 (MQ=255) tataAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATAttt < 1:3671612/149‑1 (MQ=255) aaaaTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTcac < 2:3088782/149‑1 (MQ=255) aaaTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTcaca < 1:4063255/149‑1 (MQ=255) aaaTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTcaca < 1:1356404/149‑1 (MQ=255) aTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCacaaa > 1:6444374/1‑149 (MQ=255) caccacAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCAcaaaacaaaa > 2:4939045/1‑149 (MQ=255) accacAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACaaaaa < 1:947944/149‑1 (MQ=255) ccacAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACaaaaaa < 1:3815727/149‑1 (MQ=255) cacaATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAAt > 2:8227218/1‑149 (MQ=255) cacaATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAAt > 1:2985375/1‑149 (MQ=255) acaATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATc > 2:6419429/1‑149 (MQ=255) aTAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTTTCTTTTTAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATcccc > 2:3591347/1‑149 (MQ=255) aaaTTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGCGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCt < 2:4698323/149‑1 (MQ=255) tataACATCTAAAGATAGCAATGACAAGCTTTTTCTCACTTAAACGCGAATTATTTTCAAGTGAATATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACACAAAATCCCCCTGACt < 2:4498715/149‑1 (MQ=255) aaCATCTAAAAATAACAGTGACAAACTTATTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTATGACGAGATAATCATTTTAAAATTTTATATAAAAAAAAAAAAAAAATCCCCCTGACTagg < 2:793220/149‑1 (MQ=255) cATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTGCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTaggag < 2:391930/149‑1 (MQ=255) aTCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTaggagg > 1:8279167/1‑149 (MQ=255) tCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAggg > 1:8470153/1‑149 (MQ=255) aaaGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATc > 1:243979/1‑149 (MQ=255) aGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCAGTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCTg > 1:5607835/1‑149 (MQ=255) | ATCAGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATACCAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCTGAA > AM406671/1942584‑1942875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |