Predicted mutation
evidence seq id position mutation annotation gene description
RA AM406671 1,223,557 2 bp→AG intergenic (+245/+299) llmg_1251 → / ← llmg_1252 hypothetical protein predicted by Glimmer/Critica/conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM4066711,223,5570GA92.4% 2308.9 / 138.5 668intergenic (+245/+300)llmg_1251/llmg_1252hypothetical protein predicted by Glimmer/Critica/conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (23/28);  new base A (262/355);  total (285/383)
Fisher's exact test for biased strand distribution p-value = 7.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.73e-02
*AM4066711,223,5580AG92.5% 2479.9 / 172.3 668intergenic (+246/+299)llmg_1251/llmg_1252hypothetical protein predicted by Glimmer/Critica/conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base G (262/355);  minor base . (22/28);  total (285/383)
Fisher's exact test for biased strand distribution p-value = 8.82e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 668 total aligned reads displayed.

ATTAGGGTCGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAAGTGATATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATCTTT  >  AM406671/1223417‑1223694
                                                                                                                                            ||                                                                                                                                        
  tagggtcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAAt                                                                                                                                >  2:1880294/1‑149 (MQ=255)
     ggtcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAAtttt                                                                                                                             <  1:8294180/149‑1 (MQ=255)
     ggtcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAAtttt                                                                                                                             >  2:2838565/1‑149 (MQ=255)
      gtcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTa                                                                                                                            <  1:1266128/149‑1 (MQ=255)
      gtcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTa                                                                                                                            >  1:8803283/1‑149 (MQ=255)
          gtattagggtcggtattagggtcgGTATTGAGGTCAGTATTGAGGTTAGTATCGCGGTCAGTATTCAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCACTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATAc                                                                                                                        <  2:8892840/149‑1 (MQ=21)
             ttAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAg                                                                                                                     <  1:4727617/149‑1 (MQ=255)
              tAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGa                                                                                                                    >  2:8276946/1‑149 (MQ=255)
              tAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGa                                                                                                                    >  2:6505488/1‑149 (MQ=255)
              tAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGa                                                                                                                    >  1:5667991/1‑149 (MQ=255)
               aGGTTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATTGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGAc                                                                                                                   <  2:7385234/149‑1 (MQ=21)
                gggTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGAcc                                                                                                                  <  1:8109013/149‑1 (MQ=255)
                gggTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGAcc                                                                                                                  >  1:4321872/1‑149 (MQ=255)
                gggTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGAcc                                                                                                                  >  2:4291891/1‑149 (MQ=255)
                gggACAGTATTAGGGACGGTATTGAGGTCAGTATTGTGGTGACTATCGGGGTCAGTGTTGAGCTCAGTACTAGGGTTAGTATTAGGGTCTGTATTAGTGTCAGTATTAATGACAGTATTAAATAGTATTATTAATTTTAATACTaaaac                                                                                                                  >  2:3813811/1‑145 (MQ=255)
                       tATTGGGGTCGGTATTGGGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACaaaa                                                                                                           <  2:7249370/149‑1 (MQ=25)
                       tATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACaaaa                                                                                                           >  2:2711372/1‑149 (MQ=255)
                        aTTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAAGTCAGTATTAAATAGTATTATTAATTTGAATAATAGACCTAaaaaaa                                                                                                          >  2:527574/1‑149 (MQ=25)
                         ttAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAAt                                                                                                         >  1:1010116/1‑149 (MQ=255)
                         ttAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAAt                                                                                                         >  1:5449989/1‑149 (MQ=255)
                           aGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAAttt                                                                                                       >  1:7734066/1‑149 (MQ=255)
                             ggTCGTTATTGAGGTTAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTtat                                                                                                     <  1:9101982/149‑1 (MQ=37)
                              gTCGTTATTGGGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTtata                                                                                                    <  1:4877005/149‑1 (MQ=37)
                               tCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAg                                                                                                   >  2:3583291/1‑149 (MQ=255)
                                 ggTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCt                                                                                                 <  1:3785611/149‑1 (MQ=255)
                                 ggTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCt                                                                                                 <  1:1455409/149‑1 (MQ=255)
                                  gTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTa                                                                                                >  2:7701702/1‑149 (MQ=255)
                                  gTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTa                                                                                                >  2:8531644/1‑149 (MQ=255)
                                  gTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTACTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTa                                                                                                <  1:6679829/149‑1 (MQ=38)
                                   tATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTAt                                                                                               <  1:4077918/149‑1 (MQ=255)
                                    aTTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATg                                                                                              <  1:2343760/149‑1 (MQ=255)
                                      tGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCt                                                                                            >  2:4783101/1‑149 (MQ=255)
                                          gTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTga                                                                                        <  1:5410310/149‑1 (MQ=255)
                                            cAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTgaga                                                                                      <  2:2273428/149‑1 (MQ=255)
                                             aGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAg                                                                                                   >  1:1671549/1‑135 (MQ=255)
                                                aTTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGaaaaa                                                                                  >  1:2503083/1‑149 (MQ=255)
                                                 ttGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAg                                                                                 <  2:7479973/149‑1 (MQ=255)
                                                 ttGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAg                                                                                 <  2:5985611/149‑1 (MQ=255)
                                                  tGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGc                                                                                <  1:5246139/149‑1 (MQ=255)
                                                   gAGGTTAGTATCGGGGTCAGTATTGACGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCa                                                                               <  1:5880116/149‑1 (MQ=38)
                                                    aGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCaa                                                                              >  2:5463147/1‑149 (MQ=255)
                                                        tAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACtt                                                                          <  1:1824046/149‑1 (MQ=255)
                                                        tAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACtt                                                                          >  2:617240/1‑149 (MQ=255)
                                                        tAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTAAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACtt                                                                          <  2:6055271/149‑1 (MQ=38)
                                                         aGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACttt                                                                         >  1:7984111/1‑149 (MQ=255)
                                                          gTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATAAAAAAAAAAAAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACtttt                                                                        <  2:5174196/149‑1 (MQ=25)
                                                            aTCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTc                                                                      >  2:3098170/1‑149 (MQ=255)
                                                              cGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGt                                                                    >  1:5546942/1‑149 (MQ=255)
                                                                gggTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTaa                                                                  <  1:622843/149‑1 (MQ=255)
                                                                  gTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAg                                                                <  1:7522598/149‑1 (MQ=255)
                                                                  gTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAg                                                                <  1:7111648/149‑1 (MQ=255)
                                                                     aGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGata                                                             >  2:9221944/1‑149 (MQ=255)
                                                                     aGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGata                                                             <  2:7019230/149‑1 (MQ=255)
                                                                      gTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGatat                                                            <  2:6320543/149‑1 (MQ=255)
                                                                        aTTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATAc                                                          >  1:3118165/1‑149 (MQ=255)
                                                                         ttGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATAcc                                                         <  2:5565171/149‑1 (MQ=255)
                                                                                   tATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATga                                               <  2:7636500/149‑1 (MQ=255)
                                                                                   tATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATga                                               >  2:1186831/1‑149 (MQ=255)
                                                                                    aTTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATgag                                              <  1:264944/149‑1 (MQ=255)
                                                                                     ttAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATgaga                                             >  1:7862290/1‑149 (MQ=255)
                                                                                     ttAGGGTTAGTATTAGGATCGTTATTAGGGTCAATATTAAGATCAGTATTAAATAGTATTATAAATTTTAATACAAGACCTACAAAAATTTATAGATAAGCTTTAAGAAAAAGCAAACTTTTTCGTAAAAAAATAAAAAAAAAATgaga                                             <  2:1427700/149‑1 (MQ=21)
                                                                                     ataagtttAGTATTAGGGACAGTATTAGGATCAGTATTAAGGTAAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATgaga                                             <  2:4488656/143‑1 (MQ=21)
                                                                                      tAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATgagag                                            <  1:2858058/149‑1 (MQ=255)
                                                                                      tAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATgagag                                            >  2:8622451/1‑149 (MQ=255)
                                                                                        gggTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGagagag                                          <  1:4988263/149‑1 (MQ=255)
                                                                                        gggTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGagagag                                          >  2:3004028/1‑149 (MQ=255)
                                                                                          gTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCg                                        >  1:1547015/1‑149 (MQ=255)
                                                                                          gTTAGTATTAGGGTCGGTATTAGGGTCACTATTAAGGTCCGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCg                                        <  1:6619147/149‑1 (MQ=37)
                                                                                            tAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGtt                                      >  2:7121126/1‑149 (MQ=255)
                                                                                              gTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGttat                                    >  2:4092234/1‑149 (MQ=255)
                                                                                                aTTAGGGTCGGTATTAGGGTCAGTACTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGttatta                                  >  2:5043780/1‑149 (MQ=38)
                                                                                                  tAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTattatt                                >  1:6838296/1‑149 (MQ=255)
                                                                                                     ggTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTa                             >  1:3285784/1‑149 (MQ=255)
                                                                                                     ggTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTa                             <  1:7358221/149‑1 (MQ=255)
                                                                                                     ggTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTa                             >  1:8961173/1‑149 (MQ=255)
                                                                                                     ggTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTa                             >  1:7016757/1‑149 (MQ=255)
                                                                                                         ggTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCAAAACTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCg                         <  2:9096358/149‑1 (MQ=25)
                                                                                                          gTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAACATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACATAAAAAATGAGAGAGCGTTATTATTTTAATAGt                        >  2:3949354/1‑149 (MQ=37)
                                                                                                           tATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGtt                       <  1:7599440/149‑1 (MQ=255)
                                                                                                           tATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTATAATACTAGAGCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACATTTTCGTAAAGATATACGTAAAAAATGAGAGAGCGTTATTATTTTACTCGtt                       >  2:6707727/1‑149 (MQ=25)
                                                                                                              tAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTaaa                    >  1:7211228/1‑149 (MQ=255)
                                                                                                                gggTCAGTATTAAGGTCAGGATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAAt                  <  1:3963488/149‑1 (MQ=255)
                                                                                                                   tcagtattaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaa               >  2:687521/1‑149 (MQ=255)
                                                                                                                   tcagtattaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaa               >  1:635784/1‑149 (MQ=255)
                                                                                                                    cagtattaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaag              <  2:2175157/149‑1 (MQ=255)
                                                                                                                      gtattaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagat            >  1:2191291/1‑149 (MQ=255)
                                                                                                                      gtattaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagat            <  2:7989399/149‑1 (MQ=255)
                                                                                                                       tattaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagata           <  1:580188/149‑1 (MQ=255)
                                                                                                                        attaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagataa          <  1:9221487/149‑1 (MQ=255)
                                                                                                                         ttaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagataag         <  2:778300/149‑1 (MQ=255)
                                                                                                                          taaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagataaga        <  1:3603715/149‑1 (MQ=255)
                                                                                                                           aaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGaa       >  1:4560237/1‑149 (MQ=255)
                                                                                                                            aggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAAt      >  1:8539561/1‑149 (MQ=255)
                                                                                                                            aggccagtattaaATAGTATTCTTAATCTTAATACTAGACCTACAAAAATCTCTAGCTATGCTTTGAGAAAACGCAAACTTTTTCGTAACGCTCTACCTAAAAAATGAGACAGCGTTCTTCTTTTAACCGTTCAACTtaagataagact      >  2:5646320/1‑147 (MQ=255)
                                                                                                                             ggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATc     <  1:2027128/149‑1 (MQ=255)
                                                                                                                             ggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATc     >  2:4922951/1‑149 (MQ=255)
                                                                                                                             ggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATc     >  2:2472808/1‑149 (MQ=255)
                                                                                                                              gtcagtattaaATAGTATTATTGATTTTAATAGTGGACCTGCAAAGATTTATATCTATGCTTTGAGAAAAAGCAAAGTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGTGGTATTATTTCATACGATACAATTAAGATAAGAATCt    >  2:164916/1‑149 (MQ=255)
                                                                                                                               tcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTNTAATCGTTAAAATTAAGATAAGAATCtt   <  1:5101895/149‑1 (MQ=255)
                                                                                                                               tcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTAGGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATCtt   <  2:8387306/149‑1 (MQ=39)
                                                                                                                                            ||                                                                                                                                        
ATTAGGGTCGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAAGTGATATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATCTTT  >  AM406671/1223417‑1223694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: