| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3356085 = | NA (NA) | 86 (0.600) | 11/62 | 14.6 | 38.4% | noncoding (583/1542 nt) | rrsD | 16S ribosomal RNA |
| ? | REL606 | = 3855593 | 161 (0.960) | intergenic (+14/+40) | yieF/yieG | chromate reductase, Class I, flavoprotein/predicted inner membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 300 total aligned reads displayed.
GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAggcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3356120‑3356085‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGGGTTTTTTATTTAGATCTTAACTCGCTGAATAAACTC < REL606/3855593‑3855553 GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 1:3411547/37‑1GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 1:674320/37‑1GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 1:6914463/37‑1GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG > 1:8843086/1‑37GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 2:1433885/37‑1GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 2:1974552/37‑1GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 2:4203875/37‑1GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG > 1:4063798/1‑37GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 2:4772289/37‑1GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 1:3853345/37‑1GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG > 1:3709591/1‑37GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 2:5329127/37‑1GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 1:2068810/37‑1GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 2:8625940/37‑1GCGCTAATCGGAATTACTGGGCGTAAAGCGCACGCAG < 2:5892163/37‑1 aGTTAATCGGAATTACTGGGCGTAAAGCGACCGCAGG > 1:5666683/2‑37 CGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGG > 2:5556106/1‑37 CGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGG > 1:5208138/1‑37 CGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGG < 2:10191664/37‑1 CGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGG > 2:440155/1‑37 CGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGG < 2:7223142/37‑1 CGTTAATCGGAATTACTGGCCGTAAAGCGCACGCAGG > 1:1849312/1‑37 GTTAATCGGAATTACTGTTCGTAAATCGCACGCAGGC < 2:1134605/37‑1 GTTAATCGGAATTACTGGGCGTCACGCGCACGCAGGC < 2:7689652/37‑1 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC > 1:62409/1‑37 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC < 1:7203519/37‑1 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC < 2:9861372/37‑1 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC > 2:8894779/1‑37 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC < 1:9708639/37‑1 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC > 2:8828621/1‑37 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC < 2:8418822/37‑1 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC > 1:421752/1‑37 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC < 2:8288214/37‑1 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC < 2:7972716/37‑1 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC > 1:1496645/1‑37 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC > 1:1686815/1‑37 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC < 1:1749500/37‑1 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC < 2:5808752/37‑1 GTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGC > 2:6661750/1‑37 TTACTCGGAAGTACTGGGCGTAAAGCGCCCGCAGGCG < 1:809339/37‑1 TTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCG < 2:3612125/37‑1 TTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCG < 1:7524507/37‑1 TTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCG < 1:7666857/37‑1 TTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCG > 2:5711306/1‑37 TTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCG > 2:9661277/1‑37 TTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCG < 1:10418973/37‑1 TTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCG > 1:1128950/1‑37 TTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCG < 1:5920533/37‑1 TTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCG > 1:3229113/1‑37 TTAATCGGAATTACTGGGCGGAAAGCGCACGCAGGCG > 2:10958779/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCNGGCGG < 2:10591265/37‑1 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 1:918482/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 2:3150200/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 1:4520939/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG < 1:438526/37‑1 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 1:487838/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 1:4306412/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 2:4534840/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG < 1:3920398/37‑1 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 2:5007764/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG < 1:9119483/37‑1 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 1:2765758/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 1:1952467/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG < 1:8061830/37‑1 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 2:9072090/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 1:6301514/1‑37 TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGG > 1:6643043/1‑37 TAATCGGAATTAATGGGCGTAAAGCGCACGCAGGCGG > 2:2278609/1‑37 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGc > 1:11194877/1‑36 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGG > 1:10234044/1‑37 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGG > 1:3369807/1‑37 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGG > 1:1892185/1‑37 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGG > 1:6564410/1‑37 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGG > 1:9842347/1‑37 ATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGT > 2:406491/1‑37 ATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGT > 1:501950/1‑37 ATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGT > 1:10993325/1‑37 ATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGT > 1:10124269/1‑37 ATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGT > 1:10712633/1‑37 TCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGTT > 2:744528/1‑37 TCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGTT > 1:8229887/1‑37 TCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGTT > 1:2639346/1‑37 TCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGTT > 1:1254424/1‑37 CGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGTTg > 1:8913482/1‑36 CGGAATTACTGGGCGTAAAGCGCACGCAGGCGGGTTT > 1:2187509/1‑37 GGAATTACTGGGCGTAAAGCGCACGCAGGCGGGTTTg > 2:10008464/1‑36 GAATTACTGGGCGTAAAGCGCACGCAGGCGGGTTTTT > 1:4121174/1‑37 GAATTACTGGGCGTAAAGCGCACGCAGGCGGGTTGTT > 1:1389498/1‑37 GAATTACTGGGCGTAAAGCGCACGCAGGCGGGTTGTT > 1:7923005/1‑37 AATTACTGGGCGTAAAGCGCACGCAGGCGGTTTTTTT > 2:2672383/1‑37 AATTACTGGGCGTAAAGCGCACGCAGGCGGTTTTTTT > 2:3763388/1‑37 AATTACTGGGCGTAAAGCGCACGCAGGCGGGTTTTTT > 1:5332306/1‑37 AATTACTGGGCGTAAAGCGCACGCAGGCGGGTTTTTT > 1:9581114/1‑37 ATTACTGGGCGTAAAGCGCACGCAGGCGGGTTTTTTA > 1:4565227/1‑37 GGCGTAAAGCGCACGCAGGCGGGTTGTTTTTTCAGAa > 1:6134476/1‑36 GCGTAAAGCGCACGCAGGCGGGTTGTTTATTCAGATt > 1:5257997/1‑36 GGCGGGTTTTTTATTTAGATCTTAACTCGCTGAATAA < 1:6077221/37‑1 GGCGGGTTTTTTATTTAGATCTTAACTCGCTGAATAA < 2:10047644/37‑1 GGCGGGTTTTTTATTTAGATCTTAACTCGCTGAATAA > 1:650540/1‑37 GGGTTTTTTATTTAGATCTTAACTCGCTGAATAAACT > 1:3065678/1‑37 GCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAggcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3356120‑3356085‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGGGTTTTTTATTTAGATCTTAACTCGCTGAATAAACTC < REL606/3855593‑3855553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |