| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 4,404,055 | T→A | I21N (ATC→AAC) | rpsR → | 30S ribosomal protein S18 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,404,055 | 0 | T | A | 97.5% | 132.1 / NA | 41 | I21N (ATC→AAC) | rpsR | 30S ribosomal protein S18 |
| Reads supporting (aligned to +/- strand): ref base T (1/0); major base A (16/23); minor base C (0/1); total (17/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAGCGGTAAGATTGTCCCAAGCCGTATCA > REL606/4403982‑4404126 | gagaCTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACg < 2:643169/76‑1 (MQ=255) agaCTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGa < 1:668362/76‑1 (MQ=255) gaCTAGCCATATGGTACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGAc < 2:811255/76‑1 (MQ=255) gaCTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGAc < 2:14414/76‑1 (MQ=255) tAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACtat > 2:380295/1‑76 (MQ=255) aGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACtata < 1:1127130/76‑1 (MQ=255) ccATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATaaa < 2:354060/76‑1 (MQ=255) cATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAg < 1:52281/76‑1 (MQ=255) cATATGGCACGNTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAg > 1:166154/1‑76 (MQ=255) atatGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGa > 1:455784/1‑76 (MQ=255) tatGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGat > 2:585664/1‑76 (MQ=255) atGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGata > 1:748482/1‑76 (MQ=255) tGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGatat < 1:32691/76‑1 (MQ=255) gCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCg < 1:459543/76‑1 (MQ=255) aCGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCt < 1:244673/76‑1 (MQ=255) cGTTATTTCCGTCGTCGCAAGTTCTGGCGTTTCNCCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTa < 1:962529/76‑1 (MQ=255) gTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGACATCGCTAc > 2:1119669/1‑76 (MQ=255) tCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGaa < 1:755212/76‑1 (MQ=255) cgtcgtCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGaaaa < 2:114795/76‑1 (MQ=255) cgtcgCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACt > 1:697120/1‑76 (MQ=255) cgtcgCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACt > 1:453128/1‑76 (MQ=255) cgtcgCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACt > 1:1168420/1‑76 (MQ=255) gtcgCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTa > 2:808606/1‑76 (MQ=255) tcgCAAGTTCTGCCGTTTCACCGCGGAAGGCGTNCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTAc < 1:968919/76‑1 (MQ=255) gCAATTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACAt < 2:576814/76‑1 (MQ=255) cAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAANATATCGCTACGCTGAAAAACTACTTc < 2:1032332/76‑1 (MQ=255) cAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATc > 2:79844/1‑76 (MQ=255) ttCTGCCGTTTCATCGCGGAACGCGTTCACGAGACCGACTACAAAGATATCGCTACGCTGAAAAACTGTATCACCg < 2:1068897/76‑1 (MQ=255) cTGCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGaa < 1:835101/76‑1 (MQ=255) tGCCGTTTCACCGCGGAAGGCGCTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGaaa < 1:861183/76‑1 (MQ=255) gCCGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAg > 2:424268/1‑76 (MQ=255) cGTTTCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAGCg < 2:453128/76‑1 (MQ=255) ttCACCGCGGAAGGCGTTCAAGAGAACGACTATAAAGCTATCGCTACGCTGAAAAACTACATCACCGAAAGCGGTa < 1:793186/76‑1 (MQ=255) cgcgGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAGCGGTNAGAtt > 2:959009/1‑76 (MQ=255) cgcgGAAGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAGCGGTAAGAtt < 1:380295/76‑1 (MQ=255) aaGGCGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAGCGGTAAGATTGTccc > 2:907988/1‑76 (MQ=255) cGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAGCGGTAAGATTGTCCCAAGc < 1:566666/76‑1 (MQ=255) cGTTCAAGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAGCGGTAAGATTGTCCCAAGc > 1:401297/1‑76 (MQ=255) gTTCAAGAGAACGACTATAAAGATATCGCTATGCTGAAAAACTACATCACCGAAAGCGGTAAGATTGTCCCAAGcc > 2:362780/1‑76 (MQ=255) aaGAGAACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAGCGGTAAGATTGTCCCAAGCCGTAt > 2:1144336/1‑76 (MQ=255) gagaACGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAGCGGTAAGATTGTCCCAAGCCGTATCa < 2:615726/76‑1 (MQ=255) | GAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCGAAAGCGGTAAGATTGTCCCAAGCCGTATCA > REL606/4403982‑4404126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |