| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 4,202,595 | T→C | intergenic (‑36/‑164) | iclR ← / → metH | DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,202,595 | 0 | T | C | 100.0% | 60.3 / NA | 16 | intergenic (‑36/‑164) | iclR/metH | DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/3); total (13/3) | |||||||||||
GGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCT > REL606/4202522‑4202661 | ggTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcatttcca > 2:678648/1‑76 (MQ=255) tttCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcatttccattt < 1:479114/76‑1 (MQ=255) tCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTCCAttttt > 1:341141/1‑76 (MQ=255) ccGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTCCATTTTTATTg > 2:67806/1‑76 (MQ=255) gggTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTCTATTTTTATTGTTAGCTAATGCAATAGt > 1:167576/1‑76 (MQ=255) gTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTg > 1:342164/1‑76 (MQ=255) gCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCt > 2:236059/1‑76 (MQ=255) ccATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAAc > 1:638313/1‑76 (MQ=255) aCAGTCTCCTTTTTCTGTATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATc < 2:562048/76‑1 (MQ=255) aGTCTCCTTTTTCTGTATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCg < 2:661907/76‑1 (MQ=255) ctcCTTTTTCTGTATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATg > 1:164982/1‑76 (MQ=255) tcCTTTTTCTGTATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGa < 2:358395/76‑1 (MQ=255) ccTTTTTCTGTATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAg > 2:680889/1‑76 (MQ=255) cTTTTTCTGTATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGt > 2:549560/1‑76 (MQ=255) gTATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTg > 1:274502/1‑76 (MQ=255) tATCGTGGAAATCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTGa > 1:733160/1‑76 (MQ=255) tCGTGGAAATCATTTCCACTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAAc > 1:328017/1‑76 (MQ=255) aaaTCATTTCCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAAtct > 2:464887/1‑76 (MQ=255) | GGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCT > REL606/4202522‑4202661 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |