Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 4,203,880 Δ1 bp coding (1122/3684 nt) metH → B12‑dependent methionine synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6064,203,8800G.100.0% 1199.4 / NA 232coding (1122/3684 nt)metHB12‑dependent methionine synthase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (145/87);  total (145/87)

Only 100 of 254 total aligned reads displayed.

GGCGAAGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTGATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTGCGCAGATTA  >  REL606/4203809‑4203950
                                                                       |                                                                      
ggCGAAGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCaa                                                                   <  2:2326560/76‑1 (MQ=255)
ggCGAAGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCaa                                                                   >  1:3977621/1‑76 (MQ=255)
 gCGAAGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCaaa                                                                  <  2:3440808/76‑1 (MQ=255)
 gCGAAGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCaaa                                                                  <  2:7648090/76‑1 (MQ=255)
  cGAAGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAaag                                                                 <  1:6816824/76‑1 (MQ=255)
  cGAAGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAaag                                                                 >  2:2655929/1‑76 (MQ=255)
    aaGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAaagaa                                                               >  2:8869720/1‑76 (MQ=255)
    aaGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAaagaa                                                               >  1:8938884/1‑76 (MQ=255)
    aaGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAaagaa                                                               <  1:8796251/76‑1 (MQ=255)
    aaGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAaagaa                                                               >  2:7321182/1‑76 (MQ=255)
        tAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAgaga                                                           <  2:8026612/76‑1 (MQ=255)
        tAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAgaga                                                           >  1:1663093/1‑76 (MQ=255)
         aGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGaa                                                          <  2:4519411/76‑1 (MQ=255)
           ccTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAAt                                                        >  1:21070/1‑76 (MQ=255)
            cTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATa                                                       >  1:2532282/1‑76 (MQ=255)
            cTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATa                                                       >  1:8457084/1‑76 (MQ=255)
            cTGTTTGTGAACATGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATa                                                       <  1:1365243/76‑1 (MQ=255)
            cTGGTTGTGAACGTGTGTGAACTCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATa                                                       <  1:8331232/76‑1 (MQ=255)
             tGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATAc                                                      <  2:789709/76‑1 (MQ=255)
             gttttGCGAACGTTGGTTAACCCACCAGCTACAGCGGTTCCGCTATGTTCAAGCGCCTACCAAAGAAAATAAATAc                                                      <  2:168634/74‑1 (MQ=255)
              gTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACa                                                     <  2:4856888/76‑1 (MQ=255)
              gTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACa                                                     >  1:772356/1‑76 (MQ=255)
              gTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACa                                                     >  2:5321547/1‑76 (MQ=255)
              gTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACa                                                     >  1:4899128/1‑76 (MQ=255)
              gTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACa                                                     >  1:8163604/1‑76 (MQ=255)
              gTTTGTGAACGTGGGTGAACGCACCAACGTCACAGGTTCCGCTAAGTACAAGCGCCTATCAAAGCAGAGAAATACa                                                     >  2:6132707/1‑76 (MQ=255)
               tttGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAg                                                    >  1:4747076/1‑76 (MQ=255)
                ttGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGc                                                   >  1:7978935/1‑76 (MQ=255)
                 tgtgAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCg                                                  >  1:8670218/1‑76 (MQ=255)
                 tgtgAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCg                                                  >  1:2369910/1‑76 (MQ=255)
                 tgtgAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCg                                                  >  2:7438007/1‑76 (MQ=255)
                 tgtgAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCg                                                  >  2:8103720/1‑76 (MQ=255)
                     aaCGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGc                                              >  2:8643648/1‑76 (MQ=255)
                     aaCGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGc                                              <  1:7061598/76‑1 (MQ=255)
                      aCGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCa                                             <  2:4022269/76‑1 (MQ=255)
                        gTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACt                                           >  2:190808/1‑76 (MQ=255)
                         tGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTg                                          >  2:5937738/1‑76 (MQ=255)
                          gggTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGTGAGGCACTgg                                         <  1:5487147/76‑1 (MQ=255)
                          gggTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTgg                                         <  2:2416169/76‑1 (MQ=255)
                           ggTGAACGCACCAACGTCACCGGTGCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGa                                        <  2:3711807/76‑1 (MQ=255)
                              gAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGAtgt                                     >  1:6090746/1‑76 (MQ=255)
                               aaCGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATCCAGCGAGGCACTGGAtgtg                                    <  1:4350524/76‑1 (MQ=255)
                               aaCGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGAtgtg                                    <  2:5849577/76‑1 (MQ=255)
                                 cGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGc                                  <  1:4507510/76‑1 (MQ=255)
                                  gCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGcc                                 >  1:1026702/1‑76 (MQ=255)
                                   cACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGccc                                <  2:3267173/76‑1 (MQ=255)
                                   cACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGccc                                <  1:196145/76‑1 (MQ=255)
                                    aCCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCg                               >  2:5735860/1‑76 (MQ=255)
                                    aCCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCg                               >  2:6587325/1‑76 (MQ=255)
                                    aCCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCg                               >  1:3092690/1‑76 (MQ=255)
                                      cAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGcc                             >  1:991421/1‑76 (MQ=255)
                                       aaCGTCACGGGTTCCGCAAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCca                            <  1:8848801/76‑1 (MQ=255)
                                       aaCGTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCca                            >  2:5518041/1‑76 (MQ=255)
                                        aCGTCACAGGTGCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGTCCCCCcag                           <  2:8204708/76‑1 (MQ=255)
                                         cGTCACCGGTTCCGTTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGGGAGGCACTGGATGTGGCCCGCcagc                          <  2:5167344/76‑1 (MQ=255)
                                          gTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCcagca                         >  1:2748921/1‑76 (MQ=255)
                                          gTCACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCcagca                         >  1:3383735/1‑76 (MQ=255)
                                           tccccGGTTCCGCTAATTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCcagcag                        <  2:2991054/73‑1 (MQ=255)
                                            ccccGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGCCCCGCCAGCAgg                       <  2:1757365/74‑1 (MQ=255)
                                            cACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAgg                       >  1:1835505/1‑76 (MQ=255)
                                            cACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAgg                       >  2:6157550/1‑76 (MQ=255)
                                            cACCGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAgg                       >  1:6494108/1‑76 (MQ=255)
                                              ccGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTg                     >  1:7586428/1‑76 (MQ=255)
                                               cGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCCCTGGATGTGGCCCGCCAGCAGGTgg                    <  2:87372/76‑1 (MQ=255)
                                               cGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTgg                    >  1:6052451/1‑76 (MQ=255)
                                               cGGTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTgg                    >  2:5119333/1‑76 (MQ=255)
                                                ggTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGa                   <  1:1044069/76‑1 (MQ=255)
                                                ggTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGa                   >  2:8473015/1‑76 (MQ=255)
                                                ggTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGa                   >  1:7900601/1‑76 (MQ=255)
                                                 gTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGaa                  >  1:1174217/1‑76 (MQ=255)
                                                 gTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGaa                  >  1:5311930/1‑76 (MQ=255)
                                                 gTTCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGaa                  >  1:4715953/1‑76 (MQ=255)
                                                 gTTCCGCTAAGTTAAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGaa                  <  1:3638158/76‑1 (MQ=255)
                                                  ttCCGTTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGaaa                 <  2:643246/76‑1 (MQ=255)
                                                  ttCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGaaa                 >  1:5763400/1‑76 (MQ=255)
                                                  tgccGCTAAGTTCAAGCGCCTATCAAAGAAGAAAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGaaa                 <  1:55203/74‑1 (MQ=255)
                                                   tCCGCTAATTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGaaaa                <  2:5590052/76‑1 (MQ=255)
                                                   tCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGaaaa                >  1:2881375/1‑76 (MQ=255)
                                                   tCCGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGaaaa                <  1:6240742/76‑1 (MQ=255)
                                                    ccGCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAAc               >  2:4621058/1‑76 (MQ=255)
                                                      gCTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACgg             >  1:1609443/1‑76 (MQ=255)
                                                       cTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGt            >  2:2089041/1‑76 (MQ=255)
                                                       cTAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGt            >  2:8384293/1‑76 (MQ=255)
                                                        tAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTg           <  1:5141788/76‑1 (MQ=255)
                                                        tAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTg           >  2:604445/1‑76 (MQ=255)
                                                        tAAGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTg           >  2:1584617/1‑76 (MQ=255)
                                                         aaGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTgc          >  2:7120648/1‑76 (MQ=255)
                                                         aaGTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTgc          >  1:8581529/1‑76 (MQ=255)
                                                          aGTTAAAGCGCCTATAAAAGAAGAGAAATACAGCGAGGCCCTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTgcg         <  2:1354941/76‑1 (MQ=255)
                                                           gTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTgcgc        <  1:5872697/76‑1 (MQ=255)
                                                           gTTCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTgcgc        >  2:4729588/1‑76 (MQ=255)
                                                            ttCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGGCAGCCGGGGGAAAACGGGGCGCa       >  1:6519207/1‑76 (MQ=255)
                                                            ttCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTGCGCa       >  1:5207308/1‑76 (MQ=255)
                                                             tCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTGCGCAg      <  1:8129831/76‑1 (MQ=255)
                                                             tCAAGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTGCGCAg      >  1:1554776/1‑76 (MQ=255)
                                                               aaGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTGCGCAGAt    >  1:3935496/1‑76 (MQ=255)
                                                               aaGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTGCGCAGAt    <  2:7223004/76‑1 (MQ=255)
                                                                aGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTGCGCAGAtt   <  1:4185888/76‑1 (MQ=255)
                                                                aGCGCCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTGCGCAGAtt   >  2:2779003/1‑76 (MQ=255)
                                                                 gcgcCTATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTGCGCAGATTa  <  1:8905807/76‑1 (MQ=255)
                                                                       |                                                                      
GGCGAAGATAGCCTGTTTGTGAACGTGGGTGAACGCACCAACGTCACCGGTTCCGCTAAGTTCAAGCGCCTGATCAAAGAAGAGAAATACAGCGAGGCACTGGATGTGGCCCGCCAGCAGGTGGAAAACGGTGCGCAGATTA  >  REL606/4203809‑4203950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: