| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 718423 = | 30 (0.110) | 6 (0.030) | 4/132 | 20.1 | 3.7% | pseudogene (427/858 nt) | yhhI | predicted transposase; b3484_1 |
| ? | REL606 | 718679 = | 290 (1.220) | pseudogene (683/858 nt) | yhhI | predicted transposase; b3484_1 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 320 total aligned reads displayed.
CCACAGCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATATTTTAACGA > REL606/718604‑718753 | ccACAGCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAgacga > 2:7038046/1‑76 (MQ=34) acaGCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACt < 2:2193377/76‑1 (MQ=34) acaGCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACt < 2:6296991/76‑1 (MQ=34) acaGCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACt > 1:6098069/1‑76 (MQ=34) acaGCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACt < 1:4388268/76‑1 (MQ=34) acaGCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACt < 1:8585277/76‑1 (MQ=34) caGCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTg > 2:3836174/1‑76 (MQ=34) caGCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTg < 1:6290638/76‑1 (MQ=34) gCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCa < 2:7984676/76‑1 (MQ=34) aTCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCaaaa > 2:3969846/1‑76 (MQ=34) tCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAAt < 1:6958022/76‑1 (MQ=34) cGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATaa > 1:4050908/1‑76 (MQ=34) gAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATaag > 2:8172025/1‑76 (MQ=34) gAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATaag < 1:984154/76‑1 (MQ=34) gAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATaag < 1:5570951/76‑1 (MQ=34) aCCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATaagaag < 2:1511557/76‑1 (MQ=34) cACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAagag < 1:1356423/76‑1 (MQ=34) aCTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAgg < 1:1986861/76‑1 (MQ=34) aCTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAgg > 2:6538640/1‑76 (MQ=34) tGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGaa < 1:4686858/76‑1 (MQ=34) ggCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGaaa > 1:4928796/1‑76 (MQ=34) ggCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGaaa < 1:7690802/76‑1 (MQ=34) gCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAAc < 2:5990052/76‑1 (MQ=35) gCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAAc > 2:8482933/1‑76 (MQ=35) cGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAAcgcc > 2:2699333/1‑76 (MQ=40) cGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAAcgcc > 2:9008004/1‑76 (MQ=40) gTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAAcgccg > 2:4899644/1‑76 (MQ=255) tGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAAcgccgc < 2:3541310/76‑1 (MQ=255) tGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAAcgccgc > 2:7311467/1‑76 (MQ=255) tGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAAcgccgc > 1:269526/1‑76 (MQ=255) gaATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGaa < 2:1144485/76‑1 (MQ=255) aaTAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAat < 2:7488173/76‑1 (MQ=255) aTAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAatt > 2:6899848/1‑76 (MQ=255) aTAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAatt < 1:8934034/76‑1 (MQ=255) aTAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAatt < 1:7062051/76‑1 (MQ=255) aTAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAatt < 1:2894688/76‑1 (MQ=255) aTAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAatt > 2:4597561/1‑76 (MQ=255) aaGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAattat > 2:5588147/1‑76 (MQ=255) gCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTAttt < 1:2828384/76‑1 (MQ=255) tGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTc < 1:5175201/76‑1 (MQ=255) gCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCa < 2:427705/76‑1 (MQ=255) cACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAg > 1:7149032/1‑76 (MQ=255) cACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAg < 1:2116896/76‑1 (MQ=255) cACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAg > 2:1615888/1‑76 (MQ=255) cTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAggg < 2:1949624/76‑1 (MQ=255) cTGGCGTATGGACGCGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAggg > 2:8800830/1‑76 (MQ=255) ggCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGAt > 1:7815262/1‑76 (MQ=255) ggCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGAt > 2:5186317/1‑76 (MQ=255) ggCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGAt < 2:6796383/76‑1 (MQ=255) gCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATa < 2:7198538/76‑1 (MQ=255) cGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATAc > 1:6675270/1‑76 (MQ=255) cGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATAc > 2:8646861/1‑76 (MQ=255) gTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACg < 1:4289955/76‑1 (MQ=255) gTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACg < 2:2960462/76‑1 (MQ=255) gTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACg < 1:6469132/76‑1 (MQ=255) gTATGGACGTGGTAATGAATGAAGACGACTGCAAAACAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACg < 1:8787370/76‑1 (MQ=255) tATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACgg > 1:1238987/1‑76 (MQ=255) tATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACgg < 1:5411142/76‑1 (MQ=255) aTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGc > 2:278414/1‑76 (MQ=40) aTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGc > 1:5269291/1‑76 (MQ=40) aTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGc < 1:7334771/76‑1 (MQ=40) aTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGc < 1:7477043/76‑1 (MQ=40) tGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGca < 2:429468/76‑1 (MQ=39) gACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGcaca > 2:6103297/1‑76 (MQ=39) gACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGcaca < 1:3355480/76‑1 (MQ=39) gACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGcaca > 1:347570/1‑76 (MQ=39) aCGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACAt < 1:3843041/76‑1 (MQ=39) cGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATc < 2:4988757/76‑1 (MQ=39) ggTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCt > 2:5073807/1‑76 (MQ=39) ggTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCt > 1:3749286/1‑76 (MQ=39) gTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTa < 2:8307044/76‑1 (MQ=39) gTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTa < 2:3373415/76‑1 (MQ=39) tAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTAt > 2:1363139/1‑76 (MQ=39) aatgaatgAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTTAGGGATACGGCACATCGCTAtt > 2:6842712/1‑76 (MQ=255) aatgaatgAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTAtt > 2:4496087/1‑76 (MQ=39) aatgaatgAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTAtt < 1:3197736/76‑1 (MQ=39) aatgaatgAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTAtt > 2:1761650/1‑76 (MQ=39) aatgaatgAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTAtt > 2:2274930/1‑76 (MQ=39) aatgaatgAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTAtt > 1:5997468/1‑76 (MQ=39) aatgaatgAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTAtt < 1:7885639/76‑1 (MQ=39) atgaatgaAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTa < 2:7829547/76‑1 (MQ=39) tgaatgaaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTaa < 1:1823040/76‑1 (MQ=39) aatgaaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGcaca > 2:5782013/1‑64 (MQ=40) aatgaaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAata > 2:6210746/1‑76 (MQ=39) aatgaaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAata > 1:401258/1‑76 (MQ=39) aatgaaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAata < 2:7410658/76‑1 (MQ=39) atgaaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAatat < 1:739713/76‑1 (MQ=39) tgaaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATAtt > 1:3013973/1‑76 (MQ=39) tgaaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATAtt > 1:6933730/1‑76 (MQ=39) gaaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATAttt < 2:5257915/76‑1 (MQ=39) aaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATAtttt < 2:7732969/76‑1 (MQ=39) aaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATAtttt < 1:1620359/76‑1 (MQ=39) aaGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATAtttt < 1:1523075/76‑1 (MQ=39) tgacgacTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATATTTTa > 2:4756643/2‑76 (MQ=255) aGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATATTTTa < 1:2302516/76‑1 (MQ=40) acgacTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATATTTTAAc < 1:1059776/76‑1 (MQ=255) cgacTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATATTTTAACg > 2:7699608/1‑76 (MQ=255) gacTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATATTTTAACGa > 2:3625930/1‑76 (MQ=255) gacTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATATTTTAACGa > 1:822370/1‑76 (MQ=255) gacTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATCAATATTTTAACGa > 1:2320229/1‑76 (MQ=255) | CCACAGCAATCCGAAACCACTGGCACGTGGAGAATAAGCTGCACTGGCGTATGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAACGCCGCAGAATTATTTTCAGGGATACGGCACATCGCTATTAATATTTTAACGA > REL606/718604‑718753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |