Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 895,856 | 0 | G | C | 41.3% | 52.6 / 38.2 | 46 | A26P (GCC→CCC) | ECB_00836 | putative Regulatory protein |
Reads supporting (aligned to +/- strand): ref base G (21/6); new base C (0/19); total (21/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.07e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 121 total aligned reads displayed.
ATGACGCGTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAACAGCCAG > REL606/895781‑895930 | aTGACGCGTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAgcg < 1:1163302/76‑1 (MQ=255) aTGACGCGTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAgcg < 1:1714962/76‑1 (MQ=255) aTGACGCGTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAgcg < 1:2360431/76‑1 (MQ=255) aTGACGCGTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAgcg < 1:6311956/76‑1 (MQ=255) aTGACGCGTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAgcg < 1:3493167/76‑1 (MQ=255) gACGCGTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCgcc < 1:1289371/76‑1 (MQ=255) aCGCGTGCGCTGGCAGTAGTGGTGGCGCTGGCCCTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCgcca < 1:3549709/76‑1 (MQ=255) aCGCGTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCgcca < 1:2436112/76‑1 (MQ=255) cgcgTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCgccag < 2:4243853/76‑1 (MQ=255) cgcgTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCgccag < 2:2991837/76‑1 (MQ=255) cgcgTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCgccag < 2:5406554/76‑1 (MQ=255) cgcgTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCgccag < 1:7041296/76‑1 (MQ=255) cgcgTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTAAACAGCgccag < 2:4377239/76‑1 (MQ=255) cgTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCgccagcc < 1:1862199/76‑1 (MQ=255) cgTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCgccagcc < 2:7409569/76‑1 (MQ=255) gTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCgccagcca < 2:4718477/76‑1 (MQ=255) cgcTGGCAGTAGTGGTGGCGCTGGCCCTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCGCCAGCCacac < 1:388817/76‑1 (MQ=255) cgcTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCGCCAGCCacac < 1:2562156/76‑1 (MQ=255) cgcTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCGCCAGCCacac < 1:4195697/76‑1 (MQ=255) cgcTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCGCCAGCCacac < 1:6265458/76‑1 (MQ=255) tGGCGGTGGGGGGGGCGCGGGCCCTCGTTGCGGGGGGCTGGCAGTCGG‑GGCGGTTTAACACCCCCAGCCACACCAt < 2:752882/76‑1 (MQ=255) gggCGGTGGTGGTGCCGCGGGCCCCCGTGGCGCGGGGCGGGCGGGCGT‑GGCGTCTAAACGCCCCCAGCCACACCAt < 2:2518064/75‑1 (MQ=255) agtagtGGTGGCGCTGGGACTCGTTGCGCTGGGCTGGCAGGGGTGGGGGGCGTAACAACCGCCGCCCCACCAACGa > 2:5171395/1‑76 (MQ=255) ggtggggGCGCTGCCCCTGGTGGGGCGGGGTGGGCGGTCGG‑GGCGCCTAAACACCCCCAGCCACACCATCGAAACg < 2:7116687/75‑1 (MQ=255) ggtggcgGCGCCGGCACTCGTGTGTCGGGGCTGGCGGTCGT‑GCCGCCTTACCGGCCCCAGCCACACCATCGAAACg < 2:8588332/75‑1 (MQ=255) gtggtgGCGTTGGCACGCGTTGCGCGGGGCTGGCAGTCGT‑GGCTGCTAAACAGCGCCAGCCACACCATCGAAACGc < 1:3488496/76‑1 (MQ=255) gggtggCGCGGGCCCTGGTTGCGGGGGGGGGGCGGGGGG‑GGCGGCTAACCACCCCCAGCCACACCATCGAAACGCa < 2:5268768/75‑1 (MQ=255) ggCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGGTTAACAGCGCCCGCCACCCCCTCGAAAAGCAacgc > 1:7935569/1‑76 (MQ=255) ggCGCTGCCCCTCGTTGCGCTGGGCGGGCAGTGGT‑GGGGCTTTAACACCCCCAGCCACACCATCGAAACGCAgcgc < 2:8885819/76‑1 (MQ=255) gcgcTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAAACGCCCCCGCCCCCCCCCCGAAAACCAgcgcc > 1:6089582/1‑75 (MQ=255) gcgcGGGCCCTCGTTGCGTGGGGCTGCCGGTCGG‑GGGGGCTAAACCCCCCCAGCCACACCATCGAAACGCAgcgcg < 2:854896/76‑1 (MQ=255) cTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGGTTAACAGCGCCCGCCCCCCCCTCCCAAAGCAACGGgcgg > 1:7700836/1‑76 (MQ=255) tGGCACTCGTTGCGCTTGGCTGGCAGTCGT‑GGCGGGTTTCCCTCGGCACGCACCCCCTCGAAACGCAGCGCgcggc > 2:2848195/1‑76 (MQ=255) tGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGGTTTAAAGCGCCCGCCACACCCACCAAAAACCGCGCgcggg > 2:6465200/1‑75 (MQ=255) tGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGGTTAACAACGCCCCCCACACCCACCAAAAGCAGCGCgcggc > 1:935790/1‑76 (MQ=255) tGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGGTTAACAACGCCAACCCCACCACCCAAAAGCAGCGCgcggg > 2:231663/1‑75 (MQ=255) cgcTCGTTGCGCGGGGCGGGCATGCGG‑GGCGAATAAAGAGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCt < 1:9009214/74‑1 (MQ=255) cACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGGTTGAAACCACCCAGCACCCCCCCGAAACGCAGCGCGCGgcgcg > 2:1259023/1‑75 (MQ=255) ccTCGTGGCGCGGGGCGGGCAGTGGG‑GGCGGCTTAACAGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTg < 2:6745568/75‑1 (MQ=255) tCGTTGCGGGGGGCGGGCGGCGGG‑GGGGGCTTACCAGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGaa < 1:2229255/76‑1 (MQ=255) tGCGCTGGGCTGGCAGTCGT‑GGCGGGTTTAAAACGCCCGCCCCACCCCCCAAACGCAGCGCCCGGGGCCGgaaaaa > 2:5345763/1‑74 (MQ=255) tGCGCTGGGCTGGCAGTCGT‑GGCGGGTTAACAGCCCCCACCACACCCTCGAAACGCAGGGCGCGGCCACGAAAAga > 1:1497894/1‑75 (MQ=255) tGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCGCCCCACACACCATCGAAACGCAGCGGGCGGCGCTGGCAAGt > 1:2897044/1‑76 (MQ=255) gcggctgggtgggCGGTGGG‑GGCGGTTAAACGCCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGt < 2:8149108/73‑1 (MQ=255) gcgcGGGGCGGCCGGTGGG‑GGCGCCTTACCGCCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTa < 2:8276514/76‑1 (MQ=255) cgttgggcgggCGGTCGG‑GGCGGCTAAACCCCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTaa < 2:712941/73‑1 (MQ=255) cgcTGGGCTGGCAGTCGT‑GGCGGGTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGaaa > 1:3763481/1‑76 (MQ=255) ccgtgggctggCAGCGGT‑GCCGGCTTAACCCCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTaa < 1:4382446/73‑1 (MQ=255) ggggggctggCGGTGGG‑GGCGGCTTAACGCCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTaaa < 2:2130140/73‑1 (MQ=255) ggggggcgggcGGCCGG‑GGCGTCTCAACGGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTaaa < 1:8176937/73‑1 (MQ=255) gctgggctggCAGTCGT‑GGCGGGTTAACAGCGCCAGCCACACCATCGAAACGCCGCGCGCCGCGCTGGAAAGTaaa > 1:6587413/1‑76 (MQ=255) gtgggcaggCGGGTGT‑GGCGTATAAACCGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAg < 2:3440598/75‑1 (MQ=255) cggggctggCAGTCGT‑GGCGGTTTAACAGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAg < 2:8767351/74‑1 (MQ=255) ggggctggCAGTCGG‑GGCGTCTACACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAgc < 1:4366404/75‑1 (MQ=255) ggggtggCCGTCGG‑CGCGACTAACCACCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAgcg < 1:7901450/76‑1 (MQ=255) ggggCAGTCGT‑GGCGGCTAACCGCCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAg < 1:8150068/74‑1 (MQ=255) ctggCAGTCGT‑GGCGGGTTTAAAGCGCCCGCCACACCCTCCAAACGCCGCGCGCGGGGCTGCAAAGTAAAgagcca > 2:2311998/1‑74 (MQ=255) tggCAGTCGT‑GGCGGGTTTACAGCGCCCGCCACACCATCGAAAAGCAGCGCCCGGCGCCGGAAAGAAAAgagccag > 2:1834929/1‑73 (MQ=255) ggCTGTGGT‑GGTGGTTAAGCAGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCACAGGa < 2:1643124/76‑1 (MQ=255) gCAGTCGT‑GGCGGGTTTAAAACCCCACCCACACCCACCAAACGCAGGGGCCGGGGGTGGAAAAGAAAACGCAGGaa > 2:5285728/1‑76 (MQ=255) cAGTCGT‑GGCGGGTTTACACCGCCAGCCCCACCATCCAAACGCAGCGCGCGGCGCTGAAAAAGAAAACgaacgaac > 2:1172391/1‑76 (MQ=255) cAGTCGT‑GGCGGGTTAACAGCGCCAGCCACACCATCCAAAAGCAACGCGCGGCGCTGGAAAGCAAAGCGCAGGGAc > 2:4538084/1‑76 (MQ=255) cAGTCGT‑GGCGGCTTAACAGCGCCAGCCACACCCTCGAAACGCAGCGCGCGGGGCCGGAAAGGAAAACGCAGGGAc > 2:6214898/1‑76 (MQ=255) aGTCGT‑GGCGGGTTAACAGCGCCCGCCACACCCTCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAACGCAGGGACt > 2:6167850/1‑76 (MQ=255) aGTCGT‑GGCGGCTTAACAGCGCCCGCCCCACCAACCAAACGCAGCGCCCGGGGCTGGAAAGTAAAACGCAAGacat > 2:3550121/1‑73 (MQ=255) ggggT‑GGCGGCACACCCGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTg < 1:1200479/73‑1 (MQ=255) gTCGT‑GGCGGGTTTACAGCGCCCGCCACCCCATCCAAAAGCAGAGCGCGGCGCTGAAAAGAAAAGCGCAGGAACTg > 2:7799593/1‑76 (MQ=255) cGT‑GGCGGGTTAACAGCGCCCGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCCGGAAATGAc > 2:1701281/1‑76 (MQ=255) cGT‑GGCGGGTTAACAAAGCCCGCCACACCATCGAAACGCAGCGCGCGGCGCCGAAAAGGAAAGAGCAGGAACTGaa > 2:5623731/1‑75 (MQ=255) gT‑GGCGGGTTTACAACGCCCGCCCCACCATCGAAACGCAGCGCGCGGCGCTGGAAAGTAAAGCGCAGGAACTGaag > 2:1374113/1‑74 (MQ=255) gT‑GGCGGGTTTACAACGCCAGCCACACCATCCAAAAGCAGCGCGCGGCGCCGGAAAGAAAAAGGCAGGGACTGACg > 2:8954429/1‑76 (MQ=255) gT‑GGCGGGTTAACAGCGCCCGCCCCACCACCCAAACGCAGCGCGCGGCGCCGGAAAAGAAAGAGCAGGAACTGACg > 2:1621174/1‑76 (MQ=255) t‑GGCGGCTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACga > 2:2728057/1‑76 (MQ=255) ggcggcTTAACAGCGCCAGCCACACCATTGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACgaa > 1:3406390/1‑76 (MQ=255) ggcggcTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTgaagaa > 2:7755358/1‑76 (MQ=255) ggcggcTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACgaa > 2:742480/1‑76 (MQ=255) ggcggcTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACgaa > 2:234849/1‑76 (MQ=255) gccggcTTACCCGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACgaa < 1:4005592/74‑1 (MQ=255) ggagcTTACCAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACgaag < 2:1461517/73‑1 (MQ=255) gcTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGaaa > 2:6148813/1‑76 (MQ=255) cTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGaaaa > 1:1505151/1‑76 (MQ=255) cTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGaaaa > 1:7370063/1‑76 (MQ=255) cTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGaaaa > 1:1701123/1‑76 (MQ=255) ttAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGaaaaa > 2:6285797/1‑76 (MQ=255) ttAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGaaaaa > 1:5671970/1‑76 (MQ=255) ttAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGaaaaa > 2:8151209/1‑76 (MQ=255) aaaaCAGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGaaaaa < 1:7599010/74‑1 (MQ=255) tAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAc > 2:2662919/1‑76 (MQ=255) aaCCGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAca < 1:1951863/76‑1 (MQ=255) aaCAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAca > 2:3483440/1‑76 (MQ=255) aaCAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAca > 1:5171559/1‑76 (MQ=255) aaCAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAca > 2:105906/1‑76 (MQ=255) cAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAcagc > 2:8952227/1‑76 (MQ=255) cAGCCCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAcagc < 1:6040239/76‑1 (MQ=255) aGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAcagcc > 1:5012244/1‑76 (MQ=255) aGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAcagcc > 1:6302495/1‑76 (MQ=255) aGCCCCACCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAcagcc < 2:4757500/76‑1 (MQ=255) cgcCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAcagccag < 1:4224690/76‑1 (MQ=255) cgcCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAcagccag > 1:2730654/1‑76 (MQ=255) cgcCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAAcagccag > 2:3406738/1‑76 (MQ=255) | ATGACGCGTGCGCTGGCAGTAGTGGTGGCGCTGGCACTCGTTGCGCTGGGCTGGCAGTCGT‑GGCGGCTTAACAGCGCCAGCCACACCATCGAAACGCAGCGCGCGGCGCTGAAAAGTAAAGCGCAGGAACTGACGAAGAAAAACAGCCAG > REL606/895781‑895930 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |