| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 98.8% | 630.6 / 0.3 | 160 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (87/71); total (88/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 246 total aligned reads displayed.
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695 | aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 2:500032/1‑76 (MQ=255)aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 2:2769030/1‑76 (MQ=255) tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGACAAAACTACA‑t > 2:2252376/1‑76 (MQ=255) tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t > 1:5339783/1‑76 (MQ=255) tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t < 2:3454813/76‑1 (MQ=255) tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t > 1:2588554/1‑76 (MQ=255) aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt > 1:6179610/1‑76 (MQ=255) cATTATTTAACATACGCGTCCTGCCTGTAATTTGAGAACGAATTTAAACAGCTTCACCTTGAAAAAACTACA‑tttt > 2:5299104/1‑76 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 2:4901180/76‑1 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 1:397625/76‑1 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 2:2928718/76‑1 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt > 1:1954712/1‑76 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 2:1970378/76‑1 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 1:768360/76‑1 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt > 2:9198658/1‑76 (MQ=255) attattCAACATACGCGTCC‑GACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt < 2:8539925/76‑1 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:7328615/1‑76 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:3955253/1‑76 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:4416243/1‑76 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:5365045/1‑76 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:4678929/1‑76 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 2:4810504/1‑76 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tt > 1:822338/1‑76 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑tttt < 2:1441662/76‑2 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑ttttc < 1:8013607/76‑3 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑ttttc < 1:3872672/76‑3 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑ttttc < 1:1863585/76‑3 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt‑ttttc < 1:6576930/76‑3 (MQ=255) tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGa < 2:8059890/76‑1 (MQ=255) aCGCTTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGaa < 2:7434077/76‑1 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGaa < 2:5438013/76‑1 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGaaa > 1:35525/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGaaa > 1:6016651/1‑76 (MQ=255) gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAAt < 2:649331/76‑1 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATg > 2:6742107/1‑76 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATgg > 1:6898926/1‑76 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATgg > 1:3489298/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGAc < 1:1158308/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGAc > 2:1583373/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTT‑TTTCATCGTGAAATGGACa > 1:4472792/1‑76 (MQ=255) cTGACTGTACTTTGGGAACGAATTTAAACCGCTTTACCTTGAAACAACTACA‑TTTTCTTTCATAGTGAAATGGACa > 2:6217856/1‑76 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACag > 2:4199277/1‑76 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACag > 1:5552148/1‑76 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACag < 2:4649716/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACag < 1:49555/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACag < 1:7942106/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACaga < 1:4273273/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACaga < 1:3822021/76‑1 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACagag > 1:9172482/1‑76 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACagag < 1:6302846/76‑1 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACagag > 1:6361026/1‑76 (MQ=255) cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAgg > 2:8895217/1‑76 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGa < 2:5178164/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGa < 2:1352713/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATa > 2:9114525/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATa < 2:2155010/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:1005796/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:2944118/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:4426539/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:2032486/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:6132494/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 1:8298137/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATaa > 2:1211007/1‑76 (MQ=255) tttGAGAACGAATTTAATCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAAt > 2:8118629/1‑76 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTg > 1:5090102/1‑76 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTg > 1:9376586/1‑76 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGt < 2:1462169/76‑1 (MQ=255) cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 1:919347/76‑1 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:2354571/76‑1 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 1:4261495/1‑76 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc > 1:5477147/1‑76 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 1:2393927/76‑1 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 1:2442868/76‑1 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 1:6223510/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAACTGGACAGAGGATAAATTGTTCACTAACGGAt > 1:1505179/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:3228738/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 2:8716428/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 2:3877148/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:7209946/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:1474692/1‑76 (MQ=255) aCCGCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 2:9376586/76‑1 (MQ=255) gCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 1:695973/1‑76 (MQ=255) gCTTCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATca < 2:7827629/76‑2 (MQ=255) ttCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 1:6162085/76‑1 (MQ=255) ttCACCTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:8890535/1‑76 (MQ=255) ccTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg > 1:8692632/1‑76 (MQ=255) cTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 2:8077042/1‑76 (MQ=255) cTTGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:1339407/1‑76 (MQ=255) ttGAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc < 1:5977048/76‑1 (MQ=255) gAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 1:4799532/1‑76 (MQ=255) gAAAAAACTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa < 2:5725514/76‑1 (MQ=255) aaaaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:6772620/76‑1 (MQ=255) aaaaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:2056278/76‑1 (MQ=255) aaaaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:6008263/76‑1 (MQ=255) aaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:3403709/76‑1 (MQ=255) aaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:1857775/76‑1 (MQ=255) aaaaCTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 2:9265444/76‑1 (MQ=255) cTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc < 1:4845353/76‑1 (MQ=255) cTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:3781561/1‑76 (MQ=255) cTACATTTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:3011209/1‑76 (MQ=255) | ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTT‑TTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |