New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	3594449 =	367 (1.290)	4 (0.020) +TGAATATTCA	3/130	11.6	1.2%	intergenic (‑340/+28)	yhiW/gadX	DNA‑binding transcriptional activator/DNA‑binding transcriptional dual regulator
	?	REL606	3594449 =	367 (1.290)					intergenic (‑340/+28)	yhiW/gadX	DNA‑binding transcriptional activator/DNA‑binding transcriptional dual regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAAAAAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3594462‑3594449 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGGTTTTTTTTAT  >  REL606/3594449‑3594462               ||||||||||               ATAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTA   <  2:740983/37‑1  TAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTAT  <  1:2336159/37‑1  TAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTAT  <  1:740983/37‑1  TAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTAT  >  2:2336159/1‑37               ||||||||||               ATAAAAAAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3594462‑3594449 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGGTTTTTTTTAT  >  REL606/3594449‑3594462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.