| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3594449 = | 367 (1.290) | 4 (0.010) | 4/142 | 11.5 | 0.95% | intergenic (‑340/+28) | yhiW/gadX | DNA‑binding transcriptional activator/DNA‑binding transcriptional dual regulator |
| ? | REL606 | 4022367 = | 487 (1.820) | intergenic (+26/‑129) | dsbA/yihF | periplasmic protein disulfide isomerase I/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3594526‑3594449‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGACATT > REL606/4022367‑4022441 AAGGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACC > 1:2741607/1‑76AAGGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACC > 1:6764102/1‑76 AGGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCC < 1:2500887/76‑1 AGGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCC > 1:567940/1‑76 AGGGAATTTTTACGGCACTGACCGTTCCGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCC < 1:9014616/76‑1 GGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCCG > 1:4984207/1‑76 GGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCCG < 2:8942606/76‑1 GGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCCG < 2:2741053/76‑1 GGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCCG > 1:6855992/1‑76 GGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCCG < 2:2676162/76‑1 GGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCCG < 2:190937/76‑1 GGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCCG < 2:6463477/76‑1 GGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAAGAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCCG < 2:2893265/76‑1 ATAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTA > 1:740983/1‑37 ATAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTA < 2:740983/37‑1 TAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTAT < 1:2336159/37‑1 TAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTAT > 2:2336159/1‑37 ccgGTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCGGATAATGCGCCCTGCCGCTGGAC < 2:816545/73‑1 CCCGTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGAC < 2:855906/76‑1 CCCGTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGAC < 2:8996900/76‑1 CCCGTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGAC < 2:6179934/76‑1 CCCGTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGAC < 2:2404601/76‑1 CCCGTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGAC < 2:1653589/76‑1 CCCGTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGAC < 1:5742180/76‑1 CCCGTAAATATTCACGGTTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGAC < 2:78603/76‑1 CCGTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGCCCTGCCGCTGGACA < 1:5891931/76‑1 CGTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGACAT > 2:6161186/1‑76 CGTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGACAT > 2:5255486/1‑76 GTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGACATT > 2:2428055/1‑76 GTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGACATT > 1:1197553/1‑76 AAGGGAATTTTTACGGCACTGACCGTTCTGCGGAAGGAATAAGATTATAGAGTTTTACTCAGACATAAAAAAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3594526‑3594449‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgTGAATATTCACGGGTTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCGTCCTGCCGCTGGACATT > REL606/4022367‑4022441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |