| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 1,886,608 | G→A | intergenic (‑438/+231) | yobF ← / ← yebO | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,886,608 | 0 | G | A | 97.3% | 1318.3 / 13.5 | 336 | intergenic (‑438/+231) | yobF/yebO | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (4/5); new base A (138/189); total (142/194) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
Only 100 of 339 total aligned reads displayed.
AGTCAATCCCCAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGAAAAT > REL606/1886535‑1886680 | gTCAATCCCCAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACAttt > 1:5467099/1‑76 (MQ=255) cAATCCCCAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCg > 1:4022304/1‑76 (MQ=255) cAATCCCCAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCg > 1:4227758/1‑76 (MQ=255) cAATCCCCAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCg > 2:6644107/1‑76 (MQ=255) aTCCCCAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCt < 1:34576/76‑1 (MQ=255) aTCCCCAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCt > 2:3198591/1‑76 (MQ=255) aTCCCCAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTCCGCt < 1:8198490/76‑1 (MQ=255) tCCCCAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACGTTTCGCta > 2:8396638/1‑76 (MQ=255) ccccAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCtaa > 1:4436334/1‑76 (MQ=255) ccccAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCtaa > 1:1848615/1‑76 (MQ=255) ccccAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCtaa < 2:8036400/76‑1 (MQ=255) cccAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCtaat > 2:3345682/1‑76 (MQ=255) aaaGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTaataaa < 2:4451156/76‑1 (MQ=255) gggATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAataaataa > 1:3673377/1‑76 (MQ=255) aTTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATAc < 2:2444402/76‑1 (MQ=255) ttGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATAcc > 1:5040020/1‑76 (MQ=255) ttGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATAcc < 1:7328740/76‑1 (MQ=255) tGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCa < 1:8044531/76‑1 (MQ=255) tGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCa < 2:5011090/76‑1 (MQ=255) tGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCa > 1:4137427/1‑76 (MQ=255) aaaaTTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACg < 2:9232322/76‑1 (MQ=255) aaaaTAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATc < 1:5926699/76‑1 (MQ=255) aaaaTAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATc > 1:5857720/1‑76 (MQ=255) aaaaTAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATc > 1:7237515/1‑76 (MQ=255) aaGAAAAATTGATGAATGAGCAAAAAATCAATAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACaaa > 1:1273685/1‑76 (MQ=255) aGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAAt > 1:3291255/1‑76 (MQ=255) aaaaaTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATcc < 1:9387472/76‑1 (MQ=255) aaaaaTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATcc < 1:895827/76‑1 (MQ=255) aaaaaTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATcc < 1:6557958/76‑1 (MQ=255) aaaaTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCg > 2:6439453/1‑76 (MQ=255) aaaaTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCg > 2:765343/1‑76 (MQ=255) aaaaTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCg > 2:1236415/1‑76 (MQ=255) aaaaTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCg > 1:8417383/1‑76 (MQ=255) aaaTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGa > 2:5627987/1‑76 (MQ=255) aaaTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGa > 1:2207229/1‑76 (MQ=255) aaTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGAt > 2:1994450/1‑76 (MQ=255) aTTGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATg < 1:1923212/76‑1 (MQ=255) ttGATGAATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGt < 1:3861199/76‑1 (MQ=255) tgatgaATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTa > 1:1248751/1‑76 (MQ=255) gatgaATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTaa < 2:2198243/76‑1 (MQ=255) gatgaATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTaa > 1:7682923/1‑76 (MQ=255) gatgaATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTaa < 2:2645490/76‑1 (MQ=255) gatgaATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTaa < 1:3170240/76‑1 (MQ=255) gatgaATGAGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTaa > 1:4889547/1‑76 (MQ=255) atgaatgaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTaaa < 2:8626231/76‑1 (MQ=255) tgaatgaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAAc < 2:8229416/76‑1 (MQ=255) tgaatgaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAAc < 1:2540333/76‑1 (MQ=255) gaatgaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACa < 2:3463077/76‑1 (MQ=255) gaatgaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACa < 2:1073181/76‑1 (MQ=255) aatgaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACAt > 1:2319304/1‑76 (MQ=255) atgaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATc > 1:2355647/1‑76 (MQ=255) tgaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATcc > 2:737487/1‑76 (MQ=255) tgaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATcc > 2:1492042/1‑76 (MQ=255) gaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCt < 1:1412450/76‑1 (MQ=255) gaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCt > 2:6052134/1‑76 (MQ=255) gaGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCt < 2:1828640/76‑1 (MQ=255) aGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCta > 2:2934939/1‑76 (MQ=255) aGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCta > 2:9419016/1‑76 (MQ=255) aGCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCta < 1:5636340/76‑1 (MQ=255) gCAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaa < 1:7575658/76‑1 (MQ=255) gCAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaa < 2:1775850/76‑1 (MQ=255) cAAAAAATCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaat < 1:5244266/76‑1 (MQ=255) aaaaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaata < 1:7088485/76‑1 (MQ=255) aaaaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaata > 2:31560/1‑76 (MQ=255) aaaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaataa < 1:6824305/76‑1 (MQ=255) aaaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaataa < 1:1580328/76‑1 (MQ=255) aaaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaataa > 2:6927453/1‑76 (MQ=255) aaaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaataa < 1:2116043/76‑1 (MQ=255) aaaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaataa < 1:6124607/76‑1 (MQ=255) aaaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaataa < 1:466205/76‑1 (MQ=255) aaaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaataa < 1:5320357/76‑1 (MQ=255) aaaaaCCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCtaataa < 1:698793/76‑1 (MQ=255) aaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATaaa > 1:9102335/1‑76 (MQ=255) aaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATaaa < 2:8512875/76‑1 (MQ=255) aaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATaaa > 1:7276886/1‑76 (MQ=255) aaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATaaa > 1:5067677/1‑76 (MQ=255) aaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATaaa < 2:6312359/76‑1 (MQ=255) aaaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATaaa < 2:5462450/76‑1 (MQ=255) aaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAAt < 1:6420954/76‑1 (MQ=255) aaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAAt > 2:3690412/1‑76 (MQ=255) aaaTCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAAt > 1:6769620/1‑76 (MQ=255) aTCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTa < 1:876498/76‑1 (MQ=255) tCAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTaa > 2:4231406/1‑76 (MQ=255) cAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAAt < 1:6288323/76‑1 (MQ=255) cAAGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAAt < 1:204599/76‑1 (MQ=255) aaGAGAGAAACATTTCTCTAATAAATAATACCACGCTTAATCACAAATCCGATGGAAACATCCTAATAAATTAATg < 2:4436333/76‑1 (MQ=255) aaGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATg > 2:4844793/1‑76 (MQ=255) aaGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATg < 1:785615/76‑1 (MQ=255) aaGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATg < 1:1033015/76‑1 (MQ=255) aaGAGAGAAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATg > 2:7216700/1‑76 (MQ=255) gagagaAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAg < 1:8009029/76‑1 (MQ=255) gagaAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGa < 1:2918129/76‑1 (MQ=255) gagaAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGa < 1:9499821/76‑1 (MQ=255) agaAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGaa < 1:2974188/76‑1 (MQ=255) gaAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGaaa < 2:52719/76‑1 (MQ=255) gaAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGaaa > 1:957446/1‑76 (MQ=255) gaAACATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGaaa > 1:5733984/1‑76 (MQ=255) aaaCATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGaaaa < 1:2592664/76‑1 (MQ=255) aaCGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGAAAat < 1:1695097/76‑1 (MQ=255) aaCATTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGAAAat > 1:4380767/1‑76 (MQ=255) | AGTCAATCCCCAAAGGGATTGAAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGAGGAAAAT > REL606/1886535‑1886680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |