Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 4,097,495 | +CC | coding (78/846 nt) | glpF ← | glycerol facilitator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 4,097,492 | 1 | . | C | 89.4% | 932.0 / 98.2 | 245 | coding (81/846 nt) | glpF | glycerol facilitator |
Reads supporting (aligned to +/- strand): ref base . (11/15); new base C (126/93); total (137/108) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.49e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | REL606 | 4,097,492 | 2 | . | C | 89.4% | 934.0 / 98.2 | 245 | coding (81/846 nt) | glpF | glycerol facilitator |
Reads supporting (aligned to +/- strand): ref base . (11/15); new base C (126/93); total (137/108) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.49e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 270 total aligned reads displayed.
ACCCCCAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCTTTCAAGGTT > REL606/4097418‑4097558 || aCCCCCAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTgcaacgca‑‑a‑‑c > 2:785046/1‑76 (MQ=255) ccccAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑ccc > 2:4709546/1‑76 (MQ=255) cccAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑cccc < 1:6262998/76‑2 (MQ=255) cccAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑cccc < 1:1804329/76‑2 (MQ=255) cccAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑cccc > 2:3334615/1‑75 (MQ=255) ccAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑ccccc > 1:6784960/1‑74 (MQ=255) ccAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑ccccc < 1:9077141/76‑3 (MQ=255) ccAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑ccccc > 1:9161236/1‑74 (MQ=255) cAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCccca < 1:1350526/76‑1 (MQ=255) cAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCccca < 1:4504012/76‑1 (MQ=255) cgTCCCCAAAGGACACTGATTTCCCCCTGACCAAAAGCCGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCccac < 1:8016340/75‑1 (MQ=255) aGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCccac < 1:3106491/76‑1 (MQ=255) aGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCccac > 2:3853776/1‑76 (MQ=255) gTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCccaca < 1:10395582/76‑2 (MQ=255) gTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCccaca < 2:2711587/76‑2 (MQ=255) tCCCCATATGTCACTGATTTCCCACTGACAAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCccacac < 2:5997376/76‑3 (MQ=255) tCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCccacac > 2:4217052/1‑74 (MQ=255) tCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCccacac > 2:2529289/1‑74 (MQ=255) tCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCccacac < 1:8154352/76‑3 (MQ=255) ccccAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCccacaca < 2:4108889/76‑4 (MQ=255) aaaTGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCgaag > 2:4683562/1‑76 (MQ=255) aaaTGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCgaag > 2:10240176/1‑76 (MQ=255) aaTGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCgaaga > 2:613958/1‑76 (MQ=255) aTGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCgaagaa < 2:4578367/76‑1 (MQ=255) aTGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCgaagaa > 2:827669/1‑76 (MQ=255) aTGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCgaagaa > 1:5124222/1‑76 (MQ=255) tGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGaaa < 2:6529855/76‑1 (MQ=255) tGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGaaa > 1:1459257/1‑76 (MQ=255) tGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGaaa > 2:5084576/1‑76 (MQ=255) tGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGaaa > 2:9833922/1‑76 (MQ=255) gACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGaaaa > 1:10226993/1‑76 (MQ=255) gACACTGATTTCCCACTAACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGaaaa < 1:9450390/76‑1 (MQ=255) cacTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATc > 2:1244456/1‑76 (MQ=255) cacTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATc < 1:818474/76‑1 (MQ=255) acTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATca < 1:2525062/76‑1 (MQ=255) acTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATca < 2:5396071/76‑1 (MQ=255) acTGATTTCCCACGGCCCAAAAGACGCCCCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATca < 1:2790194/76‑1 (MQ=255) cTGATTCCCCACTGACCAAAAGACGCCCCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATcaa < 2:8822790/76‑1 (MQ=255) tGATTTCCCACTGACCAAAAGCCGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATcaac < 2:1770555/76‑1 (MQ=255) tGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATcaac < 1:1272606/76‑1 (MQ=255) taTTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACGCCGAAGAAAATcaaca < 1:7587329/75‑1 (MQ=255) aTTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATcaacaa < 1:3894071/76‑1 (MQ=255) aTTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATcaacaa < 2:8526571/76‑1 (MQ=255) tttCCCACTGACCAAAAGACGCCCCAGCGACTTTTAGTGCTGCAACGCAGCC‑‑CCCACACCGAAGAAAATCaacaac < 1:1078003/76‑1 (MQ=255) cccACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCg > 1:7332323/1‑76 (MQ=255) cccACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCg > 1:5846893/1‑76 (MQ=255) cccACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCg > 1:2251395/1‑76 (MQ=255) cccACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCg > 1:10044761/1‑76 (MQ=255) ccACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCgg > 2:1031162/1‑76 (MQ=255) ccACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCgg > 2:2181936/1‑76 (MQ=255) cACTGACCAAAAGACGCCCCAGCGCCTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGt < 2:8945357/76‑1 (MQ=255) cACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGt < 1:489518/76‑1 (MQ=255) cACGGACCAAAAGACGCCCCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGt < 1:769468/76‑1 (MQ=255) aCTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCggca < 1:9771791/76‑3 (MQ=255) aCTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTa < 1:4632178/76‑1 (MQ=255) cTGCCCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTAc < 1:6105037/76‑1 (MQ=255) cTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTAc > 1:1136954/1‑76 (MQ=255) gACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCg > 1:4654888/1‑76 (MQ=255) gACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCg > 1:7791695/1‑76 (MQ=255) gACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCg > 2:2049273/1‑76 (MQ=255) aCCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGa > 1:3485621/1‑76 (MQ=255) ccAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAg < 1:6546015/76‑1 (MQ=255) ccAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAg > 2:1476378/1‑76 (MQ=255) aaaaGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGa > 2:10035152/1‑76 (MQ=255) aaaaGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGa < 1:9818390/76‑1 (MQ=255) aGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAAtt < 1:6702694/76‑1 (MQ=255) gCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGc > 2:7199304/1‑76 (MQ=255) gCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGc > 2:6294609/1‑76 (MQ=255) gCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGc > 2:397993/1‑76 (MQ=255) gCACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGc > 2:1150737/1‑76 (MQ=255) gCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCCGCaa > 2:3016304/1‑76 (MQ=255) cACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCa < 1:5550387/76‑1 (MQ=255) cACCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCa > 2:5846920/1‑76 (MQ=255) aCCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCaa > 1:9272782/1‑76 (MQ=255) aCCAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCaa > 1:2728970/1‑76 (MQ=255) ccAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAAt < 2:6838869/76‑1 (MQ=255) cAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATg > 1:5653061/1‑76 (MQ=255) cAGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATg > 1:1936097/1‑76 (MQ=255) aGCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGc > 2:5572735/1‑76 (MQ=255) gCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCa > 1:9633435/1‑76 (MQ=255) gCGACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCa < 1:4193727/76‑1 (MQ=255) gACTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACt < 1:4028272/76‑1 (MQ=255) cTTTTAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTgg > 1:3786749/1‑76 (MQ=255) ttttAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGc > 2:7077038/1‑76 (MQ=255) ttttAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGc > 2:2631872/1‑76 (MQ=255) tttAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGcc > 2:9187565/1‑76 (MQ=255) tttAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGcc > 2:7932800/1‑76 (MQ=255) ttAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCt > 1:8757223/1‑76 (MQ=255) ttAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCt > 1:830683/1‑76 (MQ=255) tAGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCtt > 2:7327328/1‑76 (MQ=255) aGTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCttt < 1:8590455/76‑1 (MQ=255) gTGCTGCAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCTTTc > 2:8119541/1‑76 (MQ=255) tgctgcAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCTTTCa < 1:2383608/76‑1 (MQ=255) tgctgcAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCTTTCa < 2:9388628/76‑1 (MQ=255) tgctgcAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCTTTCa < 1:8414894/76‑1 (MQ=255) tgctgcAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCTTTCa < 2:5277535/76‑1 (MQ=255) tgcAACGCA‑‑ACCCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCTTTCAAgg > 2:4842089/1‑76 (MQ=255) gcaacgca‑‑accCCCACACCGAAGAAAATCAACACCCCGGTACCGAGGAATTCAGCAAGGCACTGGCCTTTCAAGGt < 2:7579400/76‑1 (MQ=255) caacgca‑‑accCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCTTTCAAGGtt < 2:3636418/76‑1 (MQ=255) caacgca‑‑accCCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCTTTCAAGGtt < 1:3313005/76‑1 (MQ=255) || ACCCCCAGTCCCCAAATGACACTGATTTCCCACTGACCAAAAGACGCACCAGCGACTTTTAGTGCTGCAACGCA‑‑A‑‑CCCACACCGAAGAAAATCAACAACCCGGTACCGAGGAATTCAGCAATGCACTGGCCTTTCAAGGTT > REL606/4097418‑4097558 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |