Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 1,854,401 | 0 | A | C | 48.2% | 97.9 / 65.3 | 112 | K88N (AAA→AAC) | yeaO | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (14/44); new base C (0/54); total (14/98) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.57e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 160 total aligned reads displayed.
TTTCGCGAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTGGCTACG > REL606/1854327‑1854475 | tttCGCGAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCTGGGGGGACCACGCC‑‑aaaaaa > 1:2461893/1‑76 (MQ=255) ttCGCGAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGGGGGCAACGCC‑‑CAAAAACa > 2:1545550/1‑76 (MQ=255) ttCGCGAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACa < 1:8099086/76‑1 (MQ=255) ttCGCGAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACa < 1:1581094/76‑1 (MQ=255) tCGCGAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAg < 2:6898376/76‑1 (MQ=255) cgcgAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGc < 2:300077/76‑1 (MQ=255) cgcgAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGc < 1:3153065/76‑1 (MQ=255) cgcgAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGc < 2:9361162/76‑1 (MQ=255) gcgAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGcc < 2:4546836/76‑1 (MQ=255) gAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGc < 2:10129195/76‑1 (MQ=255) gCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGGGGTCGGCGCCTTAAAAAACACCCgt > 2:3268091/1‑75 (MQ=255) acAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAGGCGGCT‑GGCGGACATCGCA‑‑AAAAACCAGCCGCTg < 2:6271398/75‑1 (MQ=255) atatCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGGGGGGACCGCC‑‑CAAAAAAAACCGCCGAcc > 1:10157862/1‑76 (MQ=255) tCTTGCAGAACTGGCGCAACAGGAGGAAGAGGGAAAGCGGCT‑GGCGGAGATCGCC‑‑AAAAAACAGCCGCTGACCCTg < 2:8178147/76‑1 (MQ=255) tCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTg < 1:8288444/76‑1 (MQ=255) tCTGGCAGAACTGGCCCACCACGAGAAAGAAGGAAAGCGGCT‑GGCGGACTTCGCC‑‑AAAAACCAGCCGCTGACCCTg < 2:9134283/76‑1 (MQ=255) gaaGAAGTGGCGCAACAGGAGCAAGAGGGAAAGCGGCT‑GGCGGACACCCCC‑‑AAAAACCAGCCGCTGACCCTGctct < 2:7871342/74‑1 (MQ=255) gaaGAAGTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCA‑‑AAAAACCAGCCGCTGACCCTGctct < 2:4447481/74‑1 (MQ=255) gCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGGGGGGAGCGCC‑‑CAAAAACAAACGCCGAACCCGctcc > 1:3065454/1‑75 (MQ=255) cAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTa < 1:3729957/76‑1 (MQ=255) cAGAACGGGCGCAACACGAGCAAGAAGAAAAGCGGCG‑GGCGGACACCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTa < 2:5719082/76‑1 (MQ=255) cAGAACGGGCGCAACACGAGAAAGAAGGAAGGCGGCG‑GGCGGACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTa < 2:5106420/76‑1 (MQ=255) agtaaCTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTa < 1:9365769/73‑1 (MQ=255) aGAACTGGCGCAACACGAGAAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTAc < 1:5530639/76‑1 (MQ=255) aGAACTGGCGCAACACGAGAAAGAAGGAAAGCGGCT‑GGCGGACATCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTAc < 1:8886121/76‑1 (MQ=255) aGAACGGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTAc < 2:8063987/76‑1 (MQ=255) aaCGGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACgc < 2:406771/76‑1 (MQ=255) agtGGCGCAACACGAACAAGAAGAAAAGCGGCG‑GGCGGACACCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACgca < 2:10247057/74‑1 (MQ=255) aCTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACgca < 1:1545550/76‑1 (MQ=255) gtGGCCCAACAAGAGAAAGAAGAAAGGGGGCG‑GGCGGCCATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACgca‑g < 2:3898530/75‑1 (MQ=255) ggCACAACACGAGCAAGAGGGAAGGGGGTT‑GGGGGACATCCCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACgca‑gca < 2:7925086/76‑1 (MQ=255) gcgcAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCaa < 1:1964984/76‑1 (MQ=255) gcgaAACACGAGAAAAAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCaa < 1:1689344/76‑1 (MQ=255) cgcAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCaaa < 1:7999932/76‑1 (MQ=255) cgcAAAACGAGCAAGAAGGAAAGCGGCT‑GGCGCACATCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCaaa < 2:9462286/76‑1 (MQ=255) gcAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCaaaa < 1:10357584/76‑1 (MQ=255) gcAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCaaaa < 1:7431186/76‑1 (MQ=255) cAACCCGAGCAAAAAGAAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCaaaaa < 1:9420365/76‑1 (MQ=255) cAACACGAGCAAGAGGGAAAGCGGCT‑GGCGTACATCGCA‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCaaaaa < 1:5618168/76‑1 (MQ=255) cAACACGAGCAAGAAGGAAAGCGGCT‑GGGGGGCATCGCC‑‑CAAAAAAAACCGCCCACCCCGCTCCACGCA‑GCcaaaa > 1:1835734/1‑76 (MQ=255) cAACACGAGCAAGAAGGAAAGCGGCT‑GGGGGGCAACGCC‑‑CAAAAAAACACCCCCACCCCGCTCCCCCCA‑GCaaaaa > 2:539107/1‑76 (MQ=255) cAACACGAGAAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCaaaaa < 1:85132/76‑1 (MQ=255) aaCACGAGAAAGAAGAAAGGGGGCG‑GGCGGACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCaaaaaa < 2:2262491/76‑1 (MQ=255) acagGAGCAAGACGGAAAGCGGGT‑GGCGGACATGCCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAac < 1:8564560/76‑1 (MQ=255) acacGAGGAAGAAGGAAAGCGGCG‑GGCGGACATCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAac < 2:4074840/76‑1 (MQ=255) acacGAGCAAGAGGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAac < 2:1938237/76‑1 (MQ=255) caggagaAAGAAGGAAAGCGGCG‑GGCGGCCATCCCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAaca < 2:2101027/73‑1 (MQ=255) acGAGCAAGAAGGAAAGCGCCT‑GGGGGACATCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAacac < 1:6472856/76‑1 (MQ=255) ggagaAAGAAGAAAAGGGGCG‑GGCGGACATCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAAcacc < 2:112159/75‑1 (MQ=255) cGAGCAAGAAGGAAAGCGGCT‑GGGGGGGAACGCC‑‑CAAAAAAAACCGCCGACCCCGCCCCTCGCACGCaaaaaaaca > 1:3256919/1‑73 (MQ=255) gagaAAGAAGGAAAGCGGCT‑GGCGGACATCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAAcacca < 2:5274409/76‑1 (MQ=255) gAGCAAGAAGGAAAGCGGCT‑GGGGGGCAACGCC‑‑AAAAAAAAACCGCCGGCCCCGCCCTCCCCA‑GCAAAAAAaacca > 1:8590251/1‑76 (MQ=255) aaaaagaagAAAAGCGGCT‑GGCGGACCTCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAAcaccac < 2:9647044/73‑1 (MQ=255) gCAAGAAGGAAAGCGGCT‑GGCGGACATCGCA‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACg < 1:3603780/76‑1 (MQ=255) aagaagGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCa < 1:9946989/76‑1 (MQ=255) gaaggaagGCGGCT‑GGCGGACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGa < 2:7595917/76‑1 (MQ=255) gaagGAAAGCGGCG‑GGCGGACATCGCA‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGa < 1:6497341/76‑1 (MQ=255) aagGAAAGCGGCG‑GGCGGACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGaa < 1:3800565/76‑1 (MQ=255) agGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAAc < 1:10119476/76‑1 (MQ=255) ggAAGGCTGCT‑GGCCGACATCCCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAAcc < 2:275132/76‑1 (MQ=255) ggAAGGCGGCG‑GGCGGACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAAcc < 2:2570721/76‑1 (MQ=255) gaaaaGCGGCT‑GGCGGCCACCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAAcc < 2:2307639/74‑1 (MQ=255) aaGCGGCT‑GGCGGACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATg < 1:5386097/76‑1 (MQ=255) aaGCGGCT‑GGCGGACACCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATg < 2:9855630/76‑1 (MQ=255) aggggCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATgc < 1:3527209/73‑1 (MQ=255) aggggCT‑GGCGGAAATCCCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATgc < 1:2257853/73‑1 (MQ=255) aGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATgc < 1:10192818/76‑1 (MQ=255) ggcg‑ggcgGACATCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCt < 2:9608608/76‑1 (MQ=255) ggCT‑GGGGGGCATTGCC‑‑AAAAAACAACCGCTGTCCCTCCTCTACGCA‑GCAAAAAAAACCCCGCCGAACCCTTCGCt > 2:4873969/1‑76 (MQ=255) gCT‑GGCGGACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTg < 2:1905959/76‑1 (MQ=255) gCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTg > 2:9151743/1‑76 (MQ=255) gCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACAACACGCAGGACCATGCGCTg > 2:9312291/1‑76 (MQ=255) cT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTgg > 1:573283/1‑76 (MQ=255) cT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTgg > 2:6684608/1‑76 (MQ=255) cT‑GCCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTgg < 1:4277454/76‑1 (MQ=255) t‑GGCGGCCACCGCA‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGt < 1:6051369/76‑1 (MQ=255) gCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGc > 1:237748/1‑76 (MQ=255) gggACGTCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCt < 1:10263492/75‑1 (MQ=255) cGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCt > 2:8925573/1‑76 (MQ=255) ggACATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTg < 1:7016340/76‑1 (MQ=255) ggACACCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTg < 2:895818/76‑1 (MQ=255) gcaCATCGCC‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTg < 2:8447890/74‑1 (MQ=255) gACATCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTgg < 2:2711139/76‑1 (MQ=255) aacacCGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTgg < 2:7781573/75‑1 (MQ=255) cATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGcc > 2:7041542/1‑76 (MQ=255) aaccGCA‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGcc < 1:9602193/73‑1 (MQ=255) accGCA‑‑AAAACCCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCg < 2:1933549/74‑1 (MQ=255) cGCC‑‑AAAAACCAGCCGCTGACCCTGCCCTACGCA‑GCAAAAAACACCACGCAGAACCAGGCGCTGGTGCTGGCCGAc < 1:7120328/76‑1 (MQ=255) gCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACt > 1:7674183/1‑76 (MQ=255) cc‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTg > 2:1453394/1‑76 (MQ=255) c‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTgg < 2:3905092/76‑1 (MQ=255) c‑‑AAAAACCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTgg < 1:1396500/76‑1 (MQ=255) c‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTgg > 1:3017563/1‑76 (MQ=255) caaaaaacCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTg < 2:4295249/74‑1 (MQ=255) aaaaaacCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTgg < 2:4867061/75‑1 (MQ=255) aaaaacCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTGGc < 1:8471016/76‑1 (MQ=255) aaaaaaCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTGGc > 1:3659755/1‑76 (MQ=255) aaacCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTGGCTa < 2:5787377/76‑1 (MQ=255) aaacCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTGGCTa < 1:7793204/76‑1 (MQ=255) aaCAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTGGCTACg > 1:1329570/1‑76 (MQ=255) | TTTCGCGAGCAATATCTTGCAGAACTGGCGCAACACGAGCAAGAAGGAAAGCGGCT‑GGCGGACATCGCC‑‑AAAAAACAGCCGCTGACCCTGCTCTACGCA‑GCAAAAAACACCACGCAGAACCATGCGCTGGTGCTGGCCGACTGGCTACG > REL606/1854327‑1854475 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |