| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 1,691,520 | (T)9→8 | intergenic (+55/‑51) | ydgR → / → gst | putative tripeptide transporter permease/glutathionine S‑transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,691,512 | 0 | T | . | 97.2% | 665.3 / 11.7 | 142 | intergenic (+47/‑59) | ydgR/gst | putative tripeptide transporter permease/glutathionine S‑transferase |
| Reads supporting (aligned to +/- strand): ref base T (3/1); new base . (94/44); total (97/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
Only 100 of 156 total aligned reads displayed.
ACAAAGCGGCGAAAGCAGCCGTAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGAAATTGTTCT > REL606/1691437‑1691583 | aCAAAGCGGCGAAAGCAGCCGTAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGCt > 2:4887091/1‑76 (MQ=255) cAAAGCGGCGAAAGCAGCCGTAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGCtt > 2:6051191/1‑76 (MQ=255) aaaGCGGCGAAAGCAGCCGTAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGCttt > 1:2733110/1‑76 (MQ=255) aaaGCGGCGAAAGCAGCCGTAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGCttt > 2:2922838/1‑76 (MQ=255) ggcgAAAGCAGCCGTAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGCtttttttt > 1:3211360/1‑76 (MQ=255) gAAAGCAGCCGTAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGAGGCttttttttgtt > 1:1787006/1‑73 (MQ=255) gTAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCa > 2:81729/1‑76 (MQ=255) tAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCAc > 1:4159926/1‑76 (MQ=255) tAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCAc > 2:1754371/1‑76 (MQ=255) tAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCAc > 2:584341/1‑76 (MQ=255) aGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACt > 2:579951/1‑76 (MQ=255) aGCGAAAAATG‑CAGGAAAA‑CTCTTTA‑AAAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACt < 2:3045394/76‑1 (MQ=255) ggaaaaaTTCCAGGAAAC‑CTTTTTA‑AAAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTa < 2:1546497/73‑1 (MQ=255) cGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTAc > 2:2236845/1‑76 (MQ=255) aaaaatTT‑CAGGGAAC‑CTCTTTT‑AAAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTAcc < 2:781401/74‑1 (MQ=255) aaaaTT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCAt > 1:2079165/1‑76 (MQ=255) aaaaTT‑CA‑GAAAA‑CTTTTTTAAAAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCAt < 1:5526728/76‑1 (MQ=255) aaaaT‑CCGGGAAT‑CTTTTTTAAAAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCAt < 1:4524970/76‑1 (MQ=255) aaaTT‑GAGGGAAATCTTTTAA‑AAAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCAt < 2:4938035/76‑1 (MQ=255) aaaTT‑CAGAGAAT‑CTTTTTA‑AAAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATa < 2:645917/76‑1 (MQ=255) aaTT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATAc > 1:2937332/1‑76 (MQ=255) aTT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACt > 2:4364106/1‑76 (MQ=255) t‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACttt > 2:1306232/1‑76 (MQ=255) gaggggAAT‑CTCTTTA‑AAAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACttt < 2:1577649/73‑1 (MQ=255) cAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTa > 2:2092614/1‑76 (MQ=255) cAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTa > 1:3112905/1‑76 (MQ=255) cAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTa > 1:4280751/1‑76 (MQ=255) aGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTaa > 2:4784150/1‑76 (MQ=255) aGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTaa > 1:1628576/1‑76 (MQ=255) gAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTaaaac > 2:3698913/1‑74 (MQ=255) gAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAAcc > 2:2668713/1‑76 (MQ=255) gAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAAcc > 2:3096608/1‑76 (MQ=255) aa‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACcac > 1:1458699/1‑76 (MQ=255) ttgttta‑ACAAGTCTCTAACTTTTCGTTAGCCGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAg < 1:1582167/73‑1 (MQ=255) tctTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGa > 2:3441733/1‑76 (MQ=255) tctTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGa > 1:152549/1‑76 (MQ=255) ctTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGa > 2:4277878/1‑76 (MQ=255) ctTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACCCACTACCATACTTTAAACCACAGAc > 2:6142294/1‑76 (MQ=255) tttt‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACa > 1:4599566/1‑76 (MQ=255) tttt‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACa > 2:6215396/1‑76 (MQ=255) ttt‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGGCACGCACTACCATACTTTAAACCACAGAcca > 2:1309095/1‑74 (MQ=255) ttt‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACaa > 2:358087/1‑76 (MQ=255) tt‑ACAAGCGGCTAACTTTTCGTTAGAGGC‑TTTTTTTTGTTCAGCCACGGAATTCGAGACTTTGAGCgacagacaca > 2:2021518/1‑74 (MQ=255) tt‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACaaa > 2:1087852/1‑76 (MQ=255) tt‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACaaa > 2:3041670/1‑76 (MQ=255) tt‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACaaa > 2:2401570/1‑76 (MQ=255) tt‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACACACTACCATACTTTAACCCACAGACaaa > 2:4644209/1‑76 (MQ=255) t‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCCTACTTTAAACCACAGACaaaa > 2:2728644/1‑76 (MQ=255) t‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACaaaa > 1:1764663/1‑76 (MQ=255) t‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACaaaa > 2:5625724/1‑76 (MQ=255) t‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACaaaa > 2:4290082/1‑76 (MQ=255) t‑ACAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACaaaa > 2:5560366/1‑76 (MQ=255) aCAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCCGCAACGCACTACCATACTTTAAACCACAGACAAAAg > 1:3019284/1‑76 (MQ=255) aCAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAg > 2:1965451/1‑76 (MQ=255) aCAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAg > 2:3849099/1‑76 (MQ=255) cAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAgg > 2:1192995/1‑76 (MQ=255) cAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAgg > 2:5379910/1‑76 (MQ=255) cAAGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAgg > 2:1132720/1‑76 (MQ=255) aaaGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAgg < 1:2094989/75‑1 (MQ=255) actccGCTAAGTTTTCGTTAGAGTC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGa < 2:2779358/73‑1 (MQ=255) aaGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGa < 1:3981530/76‑1 (MQ=255) aaGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGa < 1:1713532/76‑1 (MQ=255) aaGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGa > 2:6125217/1‑76 (MQ=255) aaGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGa > 2:166197/1‑76 (MQ=255) aGCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAg > 2:2527971/1‑76 (MQ=255) gCCGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGt < 1:2738286/76‑1 (MQ=255) ccGCTAACTTTTCGTTAGCGGCTTTTTTTTT‑TTCAGCAACCCACTTCCATACTTTAAACCACAGACAAAAagaggt > 2:2132475/1‑74 (MQ=255) ccGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAACGGAGtt > 2:5431748/1‑76 (MQ=255) ccGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGtt > 2:4646121/1‑76 (MQ=255) ccGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGtt > 2:5055337/1‑76 (MQ=255) ccGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGtt < 1:4879146/76‑1 (MQ=255) cGCTACGTTTACGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTa < 1:1849260/76‑1 (MQ=255) cGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTa > 2:914093/1‑76 (MQ=255) cGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTa < 2:3816916/76‑1 (MQ=255) cGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTa > 1:5835797/1‑76 (MQ=255) cGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTa > 1:6082871/1‑76 (MQ=255) cGCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTa < 2:2650112/76‑1 (MQ=255) gCTAACTTTTCGTTTGCGGCTTTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTa < 2:456590/76‑1 (MQ=255) gCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTAc < 2:3304781/76‑1 (MQ=255) gCTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTAc > 2:2290043/1‑76 (MQ=255) cTAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTAcc > 1:6221942/1‑76 (MQ=255) tAACTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCg < 2:5307781/76‑1 (MQ=255) aaCTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGa < 2:371788/76‑1 (MQ=255) aaCTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGa > 1:172151/1‑76 (MQ=255) aCTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGAt < 2:2877853/76‑1 (MQ=255) cTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATg > 1:779213/1‑76 (MQ=255) cTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATg < 2:3352809/76‑1 (MQ=255) cTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATg < 1:4652168/76‑1 (MQ=255) cTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATg < 1:2506364/76‑1 (MQ=255) cTTTTCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATg < 2:4528680/76‑1 (MQ=255) ttttCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGa > 1:3960150/1‑76 (MQ=255) ttCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGaaa < 2:2557318/76‑1 (MQ=255) tCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGAAAt < 2:5750536/76‑1 (MQ=255) tCGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGAAAt < 1:2655935/76‑1 (MQ=255) cGTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGCTGAAAtt > 2:3434899/1‑76 (MQ=255) gTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGAAATTg > 1:2906419/1‑76 (MQ=255) tAGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGAAATTGtt > 1:492354/1‑76 (MQ=255) aGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGAAATTGTTc < 2:1528044/76‑1 (MQ=255) aGCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGAAATTGTTc > 2:5763699/1‑76 (MQ=255) gCGGC‑TTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGAAATTGTTCt < 2:1213742/76‑1 (MQ=255) | ACAAAGCGGCGAAAGCAGCCGTAGCGTAAAATT‑CAGGGAAA‑CTCTTTT‑ACAAGCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGATGAAATTGTTCT > REL606/1691437‑1691583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |