| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 939,359 | (G)5→6 | intergenic (‑63/‑260) | cspD ← / → clpS | cold shock protein homolog/ATP‑dependent Clp protease adaptor protein ClpS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 939,354 | 1 | . | G | 99.2% | 554.4 / ‑3.2 | 132 | intergenic (‑58/‑265) | cspD/clpS | cold shock protein homolog/ATP‑dependent Clp protease adaptor protein ClpS |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (66/65); total (66/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 155 total aligned reads displayed.
AACAGTACCCTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGA‑GGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCAAGCATTT > REL606/939279‑939424 | aaCAGTACCCTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCagaga < 1:5396837/76‑1 (MQ=255) aCAGTACCCTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCagaga‑g < 1:2251466/76‑1 (MQ=255) cAGTACCCTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGA‑gg < 1:2298109/76‑1 (MQ=255) aGTACCCTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGA‑ggg < 2:6070845/76‑1 (MQ=255) gTACCCTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGA‑ggg‑g > 2:1828642/1‑76 (MQ=255) gTACCCTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGA‑ggg‑g > 1:1476044/1‑76 (MQ=255) aCCCTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGA‑ggg‑ggg < 2:368878/76‑2 (MQ=255) ccTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGA‑ggg‑gggct > 2:697767/1‑73 (MQ=255) ccTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGA‑ggg‑gggct < 2:4429375/76‑4 (MQ=255) ttCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTc < 1:5938940/76‑1 (MQ=255) ttCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTc < 2:506804/76‑1 (MQ=255) ttCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTc < 2:4399876/76‑1 (MQ=255) ttCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTc < 1:964413/76‑1 (MQ=255) ttCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTc > 1:1358165/1‑76 (MQ=255) tCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCa > 2:6153047/1‑76 (MQ=255) ccATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCaa > 1:296176/1‑76 (MQ=255) cATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCaaa > 2:158860/1‑76 (MQ=255) aTGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCaaaa > 1:725053/1‑76 (MQ=255) aTGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCaaaa < 1:951886/76‑1 (MQ=255) gCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAAcc < 2:1023707/76‑1 (MQ=255) cTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCt < 2:5004181/76‑1 (MQ=255) cTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCt > 2:2684466/1‑76 (MQ=255) cTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCt > 2:3291160/1‑76 (MQ=255) tCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCg > 1:2340344/1‑76 (MQ=255) tCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCg < 1:4774543/76‑1 (MQ=255) cGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGc > 2:2783447/1‑76 (MQ=255) cGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGc > 2:5983764/1‑76 (MQ=255) cGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGc > 2:528639/1‑76 (MQ=255) gACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGcc < 1:3069825/76‑1 (MQ=255) aCATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCa < 1:803087/76‑1 (MQ=255) aCATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCa < 2:5043565/76‑1 (MQ=255) aCATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCa > 2:862263/1‑76 (MQ=255) cATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCaa < 1:5957402/76‑1 (MQ=255) aTCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAAc < 1:1997121/76‑1 (MQ=255) aTCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAAc < 2:5716444/76‑1 (MQ=255) aTCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAAc > 1:4138203/1‑76 (MQ=255) tCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAAct < 2:4640164/76‑1 (MQ=255) ccTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTGCCCAActc > 1:4437827/1‑76 (MQ=255) ccTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAActc > 1:5668820/1‑76 (MQ=255) ccTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAActc > 1:5725509/1‑76 (MQ=255) cTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAActct < 2:2990882/76‑1 (MQ=255) ttCGCAAATCTTATACAAGTAAGATGGAATAAACCGTGATCAGAGA‑GGGCGGCTGTTCAAACCGTCGCCAGCTCTa > 2:547750/1‑76 (MQ=255) ttCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTa < 1:2769030/76‑1 (MQ=255) ttCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTa > 1:3852610/1‑76 (MQ=255) ttCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTa < 1:5110558/76‑1 (MQ=255) ttCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTa < 1:4310772/76‑1 (MQ=255) gCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGaa > 1:4007174/1‑76 (MQ=255) gCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGaa > 2:5555714/1‑76 (MQ=255) cAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGaaa > 1:5231411/1‑76 (MQ=255) cAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGaaa < 2:4170228/76‑1 (MQ=255) aaaTCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAAt < 2:1669209/76‑1 (MQ=255) aaTCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATa > 2:6142883/1‑76 (MQ=255) tCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACa < 2:1141192/76‑1 (MQ=255) tCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACa < 1:202267/76‑1 (MQ=255) tCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACa < 2:1141194/76‑1 (MQ=255) tCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACa < 1:1061991/76‑1 (MQ=255) tCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTCCAAAACCTCGCCAACTCTAGAAATACa < 1:3766335/76‑1 (MQ=255) cTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACaa < 1:3250900/76‑1 (MQ=255) ttATACAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAAt < 2:1865938/76‑1 (MQ=255) ataCAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAAttt < 1:3762849/76‑1 (MQ=255) ataCAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAAttt < 1:5983764/76‑1 (MQ=255) taCAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTa < 1:1642646/76‑1 (MQ=255) aCAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTag < 1:6029399/76‑1 (MQ=255) aCAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTag < 2:1691138/76‑1 (MQ=255) aCAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTag > 2:1380389/1‑76 (MQ=255) cAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTaga < 1:1423624/76‑1 (MQ=255) cAAGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTaga < 1:2365217/76‑1 (MQ=255) aaGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTagag > 2:2543183/1‑76 (MQ=255) aGTAAGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAgaga < 2:1095546/76‑1 (MQ=255) gTAAGATGGAATAAACCGGGGTCAGAGA‑GGGTGGCTGTTCAAAACCTCGCCCACTCTAGAAATACAATTTAGAGaa < 2:4325637/76‑1 (MQ=255) aaGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAAtt < 2:2144867/76‑1 (MQ=255) aaGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAAtt < 1:4451128/76‑1 (MQ=255) aaGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAAtt > 2:5738404/1‑76 (MQ=255) aaGATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAAtt > 2:3562942/1‑76 (MQ=255) gATGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAg < 2:124087/76‑1 (MQ=255) aTGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAgg > 2:1518623/1‑76 (MQ=255) tGGAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAggg > 1:1136263/1‑76 (MQ=255) ggAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGc > 1:1801431/1‑76 (MQ=255) gAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCg < 1:1761084/76‑1 (MQ=255) gAATAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCg > 1:903239/1‑76 (MQ=255) aaTAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGa < 1:3537230/76‑1 (MQ=255) aaTAAACCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCACGCCAACTCTAGAAATACAATTTAGAGACTTAGGGCGa > 1:1378654/1‑76 (MQ=255) aaaCCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGcc > 2:1199031/1‑76 (MQ=255) aaaCCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGcc > 1:148547/1‑76 (MQ=255) aaaCCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGcc > 2:3561343/1‑76 (MQ=255) aaaCCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGcc < 1:3536061/76‑1 (MQ=255) acccGGGGTCAGGGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAAAATTGGGGCGAGCCg < 2:4437827/74‑1 (MQ=255) aaCCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCg > 1:1446451/1‑76 (MQ=255) aaCCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCg < 2:5660972/76‑1 (MQ=255) aCCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGt > 1:1233746/1‑76 (MQ=255) aCCGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGt > 1:3211685/1‑76 (MQ=255) gggggTCAGAGAGGGG‑GGCTGTCCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCa < 2:5253637/75‑1 (MQ=255) cGGGGTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCa > 2:4744867/1‑76 (MQ=255) ggggTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCaa > 1:4746974/1‑76 (MQ=255) gggTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCAAg < 1:1016059/76‑1 (MQ=255) ggTCAGAGAGGGG‑GGCTGTTCAAACCCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCAAGc < 2:5062699/76‑1 (MQ=255) gTCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCAAGCa < 2:1978294/76‑1 (MQ=255) tCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCAAGCAt < 2:4826414/76‑1 (MQ=255) tCAGAGAGGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCAAGCAt > 1:4359614/1‑76 (MQ=255) agagagGGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCAAGCAttt < 2:6291120/76‑1 (MQ=255) | AACAGTACCCTTTTCCATGCTTCGACATCCTTCGCAAATCTTATACAAGTAAGATGGAATAAACCGGGGTCAGAGA‑GGG‑GGCTGTTCAAAACCTCGCCAACTCTAGAAATACAATTTAGAGAATTAGGGCGAGCCGTCAAGCATTT > REL606/939279‑939424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |