Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 242,203 (G)8→9 coding (193/372 nt) ECB_00212 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL606242,1951.G93.6% 373.9 / 16.6 94coding (185/372 nt)ECB_00212hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (2/4);  new base G (37/51);  total (39/55)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01

Only 100 of 120 total aligned reads displayed.

TATCAAAACCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGATTTTATT  >  REL606/242120‑242265
                                                                              |                                                                      
tATCAAAACCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAaga                                                                         <  1:4039366/76‑1 (MQ=255)
tATCAAAACCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAaga                                                                         >  1:4779821/1‑76 (MQ=255)
tATCAAAACCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAaga                                                                         <  1:5830942/76‑1 (MQ=255)
tATCAAAACCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAaga                                                                         >  2:2092109/1‑76 (MQ=255)
 aTCAAAACCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAagag                                                                       >  1:1216034/1‑76 (MQ=255)
 aTCAAAACCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAagag                                                                       <  1:5118671/76‑1 (MQ=255)
 aTCAAAACCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAagag                                                                       <  1:5210213/76‑1 (MQ=255)
  tCAAAACCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAgg                                                                      <  1:1406872/76‑1 (MQ=255)
    aaaaCCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAgggg                                                                    <  1:135349/76‑1 (MQ=255)
     aaaCCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAggggg                                                                   <  1:52117/76‑1 (MQ=255)
     aaaCCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAggggg                                                                   <  1:2599191/76‑1 (MQ=255)
      aaCCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAgggggg                                                                  <  2:2891485/76‑1 (MQ=255)
      aaCCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAgggggg                                                                  >  2:645376/1‑76 (MQ=255)
      aaCCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAgggggg                                                                  >  1:2062294/1‑76 (MQ=255)
        cccAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAgggggggg                                                                <  2:2753847/76‑1 (MQ=255)
        cccAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAgggggggg                                                                >  1:3083126/1‑76 (MQ=255)
           aaCTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAgggggggggca                                                             <  2:4569121/76‑4 (MQ=255)
               tACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGa                                                          >  2:2184400/1‑76 (MQ=255)
               tACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGa                                                          >  1:4472165/1‑76 (MQ=255)
                aCATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAg                                                         <  2:2975393/76‑1 (MQ=255)
                aCATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAg                                                         >  1:494401/1‑76 (MQ=255)
                 cATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAAAAAAAGAGGGGGGGGGCAGTGAGt                                                        <  2:2543766/76‑1 (MQ=255)
                  aTGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGtt                                                       >  1:1784860/1‑76 (MQ=255)
                   tGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGttt                                                      <  1:1262834/76‑1 (MQ=255)
                   tGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGttt                                                      <  1:463492/76‑1 (MQ=255)
                    ggAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGTGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGtttt                                                     <  2:882063/76‑1 (MQ=255)
                    ggAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGtttt                                                     <  2:1969442/76‑1 (MQ=255)
                     gAGTAATTAAAAAAGTTGATTTGAACACAAAGGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTa                                                    <  1:4056713/76‑1 (MQ=255)
                     gAGTAATTAAAAAAGTTGAATTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGttttg                                                    <  2:3820639/76‑2 (MQ=255)
                      aGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTAt                                                   >  2:3991956/1‑76 (MQ=255)
                       gTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTAtt                                                  <  1:2595293/76‑1 (MQ=255)
                       gTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTAtt                                                  >  2:1649150/1‑76 (MQ=255)
                        tAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTAttt                                                 <  1:5713420/76‑1 (MQ=255)
                         aaTTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTAtttt                                                >  2:1123992/1‑76 (MQ=255)
                         aaTTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTAtttt                                                >  1:1377825/1‑76 (MQ=255)
                           ttAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTa                                              <  2:4988222/76‑1 (MQ=255)
                           ttAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTa                                              >  1:2056045/1‑76 (MQ=255)
                             aaaaaaTTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAAt                                            <  1:529742/76‑1 (MQ=255)
                              aaaaaGTTATTTAAAAAAAAAAAAAGGGAAAAATAAAAAAAAAGGAGGGGGGGGGCAGTGAGTTTTATTTTTAATg                                           <  1:1616227/76‑1 (MQ=255)
                                 aaGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAgg                                        <  1:6144964/76‑1 (MQ=255)
                                 aaGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGa                                       <  2:3519205/76‑1 (MQ=255)
                                 aaGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGa                                       <  2:3224693/76‑1 (MQ=255)
                                  aGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGa                                       <  2:4233227/76‑1 (MQ=255)
                                   gTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGaa                                      <  2:1079791/76‑1 (MQ=255)
                                    ttGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGaaa                                     <  2:1175370/76‑1 (MQ=255)
                                     tGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGGAGGGGGTTTTATTTTTTATGAGGaaaa                                    >  2:4734974/1‑75 (MQ=255)
                                     tGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAAc                                    >  1:2094342/1‑76 (MQ=255)
                                     tGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAAc                                    >  2:3976310/1‑76 (MQ=255)
                                      gATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGGAGGGAGTATTATTTTTAATGTGGAAACa                                   >  1:625524/1‑76 (MQ=255)
                                      gATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACa                                   >  2:5463896/1‑76 (MQ=255)
                                       aTTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACAt                                  >  1:4650889/1‑76 (MQ=255)
                                       aTTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACAt                                  >  1:3880625/1‑76 (MQ=255)
                                        tttGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACAtt                                 <  2:2289282/76‑1 (MQ=255)
                                        tttGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACAtt                                 <  1:6058833/76‑1 (MQ=255)
                                         ttGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTg                                <  1:6169096/76‑1 (MQ=255)
                                          tGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGt                               <  1:4011674/76‑1 (MQ=255)
                                          tGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGt                               <  1:2789120/76‑1 (MQ=255)
                                           gAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTa                              >  1:1352533/1‑76 (MQ=255)
                                           gAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTa                              >  1:3976516/1‑76 (MQ=255)
                                           gAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTa                              >  1:5904906/1‑76 (MQ=255)
                                            aaCACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTAt                             <  1:1146254/76‑1 (MQ=255)
                                             acacAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTAtt                            <  2:1259817/76‑1 (MQ=255)
                                             acacAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTAtt                            >  1:2373326/1‑76 (MQ=255)
                                             acaaAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTAtt                            <  1:2072419/76‑1 (MQ=255)
                                               acaAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTAtttt                          >  2:1149956/1‑76 (MQ=255)
                                               acaAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTAtttt                          <  2:4651508/76‑1 (MQ=255)
                                               acaAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTAtttt                          <  1:6051718/76‑1 (MQ=255)
                                               acaAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTa                         >  2:3451495/1‑76 (MQ=255)
                                                caAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTa                         >  2:5156063/1‑76 (MQ=255)
                                                caAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTa                         <  1:3097029/76‑1 (MQ=255)
                                                 aaaTGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTAc                        >  2:842088/1‑76 (MQ=255)
                                                  aaTGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACt                       <  1:2767349/76‑1 (MQ=255)
                                                  aaTGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACt                       <  2:5888311/76‑1 (MQ=255)
                                                   aTGAAGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTg                      >  1:88134/1‑76 (MQ=255)
                                                      aaGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGttt                   <  2:2296238/76‑1 (MQ=255)
                                                      aaGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGttt                   <  2:4883753/76‑1 (MQ=255)
                                                      aaGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGttt                   <  1:4510722/76‑1 (MQ=255)
                                                       aggggAAATTAAAAAAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGtttt                  <  1:5493244/73‑1 (MQ=255)
                                                       aGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGtttt                  <  2:3713618/76‑1 (MQ=255)
                                                       aGCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGtttt                  >  2:1825257/1‑76 (MQ=255)
                                                        gCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGttttt                 <  1:5203788/76‑1 (MQ=255)
                                                        gCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGttttt                 <  2:575936/76‑1 (MQ=255)
                                                        gCGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGttttt                 >  2:5461108/1‑76 (MQ=255)
                                                         cGGAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTtg                >  1:2626360/1‑76 (MQ=255)
                                                          ggAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTtgg               <  2:3583337/76‑1 (MQ=255)
                                                           gAAATTAAAATAAAGGGGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGtttttcta              <  2:3900842/76‑4 (MQ=255)
                                                           gAAATTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTtggt              <  1:918680/76‑1 (MQ=255)
                                                            aaaTTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTtggtg             <  2:3088672/76‑1 (MQ=255)
                                                             aaTTAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTGTTTTTAATGAGGAAACATTGTATTTTACTGTTTTtggtgg            >  2:553932/1‑76 (MQ=255)
                                                               ttAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTgggg          <  1:1554790/76‑1 (MQ=255)
                                                               ttAAAATAAAAGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTgggg          >  1:3475737/1‑76 (MQ=255)
                                                                 aaaataaaaGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGAt        >  1:3553132/1‑76 (MQ=255)
                                                                   aataaaaGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGAttt      <  1:4459267/76‑1 (MQ=255)
                                                                   aataaaaGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGAttt      <  2:1853354/76‑1 (MQ=255)
                                                                   aataaaaGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGAttt      <  2:3260284/76‑1 (MQ=255)
                                                                   aataaaaGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGAttt      >  2:3962184/1‑76 (MQ=255)
                                                                   aataaaaGAGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGAtttt     <  1:3553307/76‑1 (MQ=255)
                                                                     tgaaaGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGATTtta    >  1:4335424/3‑76 (MQ=255)
                                                                     taaaaGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGATTtta    >  1:4335421/1‑76 (MQ=255)
                                                                      aaaaGAGGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGATTttat   >  2:4438230/1‑76 (MQ=255)
                                                                              |                                                                      
TATCAAAACCCAACTTACATGGAGTAATTAAAAAAGTTGATTTGAACACAAATGAAGCGGAAATTAAAATAAAAGAGGGGGGGGCAGTGAGTTTTATTTTTAATGAGGAAACATTGTATTTTACTGTTTTTGGTGGGGATTTTATT  >  REL606/242120‑242265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: