| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 74979 | 254 (1.330) | 15 (0.090) +TCCCCGCCCCCT |
7/126 | 15.3 | 6.0% | intergenic (+60/+54) | yabI/yabJ | conserved inner membrane protein/thiamin transporter subunit |
| ? | REL606 | 2287059 = | 311 (1.630) | intergenic (+70/+58) | ubiG/yfaL | 3‑demethylubiquinone‑9 3‑methyltransferase/adhesin | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 314 total aligned reads displayed.
AAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCAT > REL606/2286984‑2287134 | aaGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTccc < 1:986701/76‑1 (MQ=255) aGTGGGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTcccc < 2:2527038/76‑1 (MQ=255) gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCg < 2:4111762/76‑1 (MQ=255) tGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACTGCTCCCCGt > 2:2287923/1‑76 (MQ=255) tGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGt > 2:2351174/1‑76 (MQ=255) gAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTa > 2:5076621/1‑76 (MQ=255) gAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTa > 1:4376053/1‑76 (MQ=255) gAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTa < 2:3822010/76‑1 (MQ=255) gTTGAGTTTTGCCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGc < 1:1834376/76‑1 (MQ=21) ttGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGcc < 1:2854859/76‑1 (MQ=255) gATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCgg < 2:4801551/76‑1 (MQ=255) gATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCgg < 2:638542/76‑1 (MQ=255) gATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCgg > 2:1355756/1‑76 (MQ=255) tGTTTGGCCGCTCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGAt < 2:1758629/76‑1 (MQ=255) tGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGAt > 2:1393165/1‑76 (MQ=255) gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATa < 1:4263241/76‑1 (MQ=255) gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATa > 1:1911426/1‑76 (MQ=255) tttGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATaa > 2:2300183/1‑76 (MQ=255) ttGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAg > 2:6188627/1‑76 (MQ=255) ttGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAg > 2:4881852/1‑76 (MQ=255) tGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAgg < 1:3802534/76‑1 (MQ=255) tGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAgg > 2:2499671/1‑76 (MQ=255) ggCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGc > 2:866083/1‑76 (MQ=255) ggCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGc < 2:2890512/76‑1 (MQ=255) ggCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGc < 2:4816974/76‑1 (MQ=255) ggCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGc < 1:3933519/76‑1 (MQ=255) gCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCg > 2:5753202/1‑76 (MQ=255) ccGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGt > 2:2713808/1‑76 (MQ=255) ccGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGt > 2:2869139/1‑76 (MQ=255) ccGCGCCAAAGTCCGACGCGACGCTTGCCGCGTGTTATCAGGCATACCACTGCCACCCCAACGCCGGATAAGGCGt > 2:4990948/1‑76 (MQ=12) gcgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGttt < 1:2375962/76‑1 (MQ=255) gcgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGttt > 2:2238221/1‑76 (MQ=255) cgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGGTTa > 2:379741/1‑76 (MQ=255) cgcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCACGTAGGCCGGATAAGGCGTTTa > 2:4018811/1‑76 (MQ=255) gcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAc > 2:594845/1‑76 (MQ=255) gcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAc < 1:1640919/76‑1 (MQ=255) gcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAc > 2:6014160/1‑76 (MQ=255) gcCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAc > 1:5102424/1‑76 (MQ=255) ccAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcg > 2:4548689/1‑76 (MQ=255) ccAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcg > 2:4615913/1‑76 (MQ=255) cAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgc > 2:2969196/1‑76 (MQ=255) cAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgc > 2:6258543/1‑76 (MQ=255) aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATAAATGCTCCCCGTAGGCCGGATAAGGCGTTTTcgac > 2:2399164/1‑74 (MQ=21) aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc > 2:3064568/1‑76 (MQ=255) aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc > 2:104422/1‑76 (MQ=255) aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc > 2:5987187/1‑76 (MQ=255) aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc > 1:6297425/1‑76 (MQ=255) aTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGCAGGCCGGATAAGGCGTTTAcgccg > 2:561311/1‑76 (MQ=255) tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgccgc > 2:1258963/1‑76 (MQ=255) tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGGTTAcgccgc > 2:1955065/1‑76 (MQ=255) gCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTTCGCCGCa > 2:315095/1‑76 (MQ=255) gCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCa > 2:3531155/1‑76 (MQ=255) ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCAt < 2:4087110/76‑1 (MQ=255) ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCAt < 1:1411829/76‑1 (MQ=255) cTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATc > 2:4652308/1‑76 (MQ=255) cTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATc > 2:1544628/1‑76 (MQ=255) tGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATcc > 2:5267194/1‑76 (MQ=255) gATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 2:5488624/76‑1 (MQ=255) aTGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg > 2:6123060/1‑76 (MQ=255) tGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAACGCGTTTAAGCCCCATCCCGc > 2:2058938/1‑76 (MQ=21) gCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa < 2:3358965/76‑1 (MQ=255) cGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa > 2:1465884/1‑76 (MQ=255) cGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa < 1:5177876/76‑1 (MQ=255) gACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTGCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAc > 2:5515942/1‑76 (MQ=255) gACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAc > 1:771473/1‑76 (MQ=255) gACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGCCCGGATAAGGCGTTTACGCCGCATCCGGCAAc > 2:4392543/1‑76 (MQ=255) aCGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAcc < 2:1678172/76‑1 (MQ=255) aCGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAcc > 1:5078637/1‑76 (MQ=255) gCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGt < 1:3172902/76‑1 (MQ=255) cTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTg > 2:1798791/1‑76 (MQ=255) ttGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGc > 1:5736555/1‑76 (MQ=255) gcgTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt < 2:6147155/76‑1 (MQ=255) gcgGCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt < 1:5955476/76‑1 (MQ=255) gcctCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt < 2:369442/73‑1 (MQ=255) gTCTTATCAGGCCTCCAAATGCTCACCGTAGGCGGGCTAAGGCGTGTACGCCGCATCCGGCAACCGTGGCGACTAg > 2:538412/1‑76 (MQ=21) gTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAg > 1:3706686/1‑76 (MQ=255) tCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGa > 1:4730192/1‑76 (MQ=255) tCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGa < 2:3230810/76‑1 (MQ=255) cTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc < 1:6014160/76‑1 (MQ=255) cTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc < 1:6123060/76‑1 (MQ=255) ttACCAGGCCTACAAATGCTCCCCGTACCCCGGATAAGGCGTTTACGCGGCATCCGGCATCCGTGCCGACTAGACa < 2:5155035/76‑1 (MQ=21) aTCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGt > 2:2148976/1‑76 (MQ=255) tCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTg < 1:541964/76‑1 (MQ=255) cAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTCCGCCGCATCCGGCAACCGTGCCGACTAGACAGTGa < 2:70478/76‑1 (MQ=255) cAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGa > 1:3338297/1‑76 (MQ=255) cAGGCCTACAAATGCTCCCCGTAGGCCGAATAAGGCTTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGa < 2:4959027/76‑1 (MQ=255) aGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAt < 1:271202/76‑1 (MQ=255) gCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTa > 2:6290374/1‑76 (MQ=255) ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAc < 2:4357837/76‑1 (MQ=255) ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAc < 2:2010434/76‑1 (MQ=255) tACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCa > 2:4296551/1‑76 (MQ=255) aCAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAt > 1:3521971/1‑76 (MQ=255) aCAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAt > 2:3443002/1‑76 (MQ=255) aaaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAttt < 2:732324/76‑1 (MQ=255) aTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCa < 2:5888927/76‑1 (MQ=255) cTCCCCGTAGGCCGGATAAGGCGTTTACGCGGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCg < 1:1653233/76‑1 (MQ=255) cTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCg > 2:5830436/1‑76 (MQ=255) ccccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTc > 1:1035041/1‑76 (MQ=255) ccccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTc > 2:1122758/1‑76 (MQ=255) ccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCAt < 2:2629265/76‑1 (MQ=255) | AAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCAT > REL606/2286984‑2287134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |