| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 1,480,447 | T→C | F112S (TTT→TCT) | ydcR → | fused predicted DNA‑binding transcriptional regulator/predicted amino transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,480,447 | 0 | T | C | 98.5% | 476.8 / ‑2.4 | 132 | F112S (TTT→TCT) | ydcR | fused predicted DNA‑binding transcriptional regulator/predicted amino transferase |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (86/43); total (88/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.32e-01 | |||||||||||
Only 100 of 174 total aligned reads displayed.
GATATCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTTTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAACCGCCACA > REL606/1480374‑1480517 | gATATCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCtctc > 2:6269256/1‑76 (MQ=255)gATATCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCCGCCtctc > 1:3803954/1‑76 (MQ=255) tatCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGGCTCGGCCTCTccc > 1:3385683/1‑76 (MQ=255) tatCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCCCTccc > 1:1941361/1‑76 (MQ=255) atCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTcccc > 1:4890254/1‑75 (MQ=255) atCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCg < 2:122536/76‑1 (MQ=255) atCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCg < 2:5192299/76‑1 (MQ=255) atCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCg > 2:5647225/1‑76 (MQ=255) tCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGa < 2:901831/76‑1 (MQ=255) tCAACACTTATATTTTTGATATGTTGCAGGCCAGGCGCGAACCGTCGGGCGGTCCCTTTCCCTCCGCGTCTCCCgg > 2:4211558/1‑75 (MQ=255) cAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGAc > 1:3635574/1‑76 (MQ=255) aaCACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTTCCGTcc > 2:5115950/1‑76 (MQ=255) acacTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCGCGAccc > 2:2161310/1‑76 (MQ=255) cTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCcgcg < 1:6057270/76‑1 (MQ=255) cTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCcccg > 2:2077590/1‑76 (MQ=255) ttATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGa > 2:5790690/1‑76 (MQ=255) atatTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑Ct < 1:2625239/76‑1 (MQ=255) atatTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCCCCA‑Ct > 1:954335/1‑76 (MQ=255) tttGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGC‑ATTTTcc > 2:1706062/1‑76 (MQ=255) tttGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTcc > 1:2888938/1‑76 (MQ=255) tttGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCCACCCGCGC‑Ctttttc > 1:3805502/1‑74 (MQ=255) gATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCCACCCGCGA‑CTTTTccccc > 2:1216614/1‑76 (MQ=255) atatGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCt < 2:1915618/76‑1 (MQ=255) atatGTTGCAGGCCAATCGCGATCCGTCGGGCGTTCCGTTTGCCTCGGGCTCTCCCGACCCGCGA‑CTTTTccccac > 2:442888/1‑74 (MQ=255) tatGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTc > 2:4521310/1‑76 (MQ=255) tatGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTc > 2:5744168/1‑76 (MQ=255) tGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTccc > 1:6166450/1‑75 (MQ=255) tGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCca > 1:3030630/1‑76 (MQ=255) gTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTTCCTCGGCCTCTCCCCAACCGCGACCTTTTCCCCCTcac > 2:5376596/1‑74 (MQ=255) tGCGGGCCGGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCcaaca < 1:481574/76‑1 (MQ=255) tGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCcaaca < 2:3500515/76‑1 (MQ=255) tGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCcaaca > 2:1226404/1‑76 (MQ=255) cAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCaacaac > 2:2224017/1‑76 (MQ=255) cAGGCAAGCCGCGATCCGTCGGACGGTCCGTTTGCATCGGCCTCTCCCGACCCTCGA‑CCCTTCCCCCCCCcacaac > 2:3968982/1‑76 (MQ=255) aGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCTCCCTCCAACAACt > 2:4449822/1‑76 (MQ=255) aGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACt > 2:4474110/1‑76 (MQ=255) aGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACt > 2:459153/1‑76 (MQ=255) aGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACt < 2:5696588/76‑1 (MQ=255) aGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACt > 2:95300/1‑76 (MQ=255) aGGCCAGGCGCGCTCCGTCGTTCGTTCTGTTTGCCTCGGCCTCGCCCGACCCGCGA‑CTTTCCCCCCTCCAACAACt < 2:2947274/76‑1 (MQ=255) gCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCAA‑CTTTTCCCCCTCCAACCACCaa > 2:282208/1‑76 (MQ=255) ccggTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTaaa < 1:1863913/73‑1 (MQ=255) ccAGTCGCTATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTaaa < 1:95300/76‑1 (MQ=255) ccAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGTCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTaaa < 2:2389986/76‑1 (MQ=255) ccAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTaaa > 2:2115587/1‑76 (MQ=255) ccAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTaaa < 1:4237048/76‑1 (MQ=255) ccAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTaaa > 2:1044343/1‑76 (MQ=255) ccAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTaaa < 2:604973/76‑1 (MQ=255) cAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAAc < 2:1850236/76‑1 (MQ=255) cAGTCGCGACCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAAc < 1:1746789/76‑1 (MQ=255) aGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAAcc > 1:1811774/1‑76 (MQ=255) aGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAAcc > 1:60935/1‑76 (MQ=255) aGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAAcc > 1:5979265/1‑76 (MQ=255) cgcgATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGCCCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgct > 2:3225770/1‑76 (MQ=255) cgcgATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGAGCCGCGA‑CATTTCCCCCTCCAACAACTAAACccct > 2:4126825/1‑76 (MQ=255) cgcgATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgct > 2:4639398/1‑76 (MQ=255) cgcgATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgct > 2:2817686/1‑76 (MQ=255) cgATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgctcg > 1:401571/1‑76 (MQ=255) cgATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgctcg > 1:4335285/1‑76 (MQ=255) cgATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgctcg > 2:4468172/1‑76 (MQ=255) cgATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgctcg > 2:5503025/1‑76 (MQ=255) gATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAACCcgctcgc > 2:3096403/1‑76 (MQ=255) gATCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgctcgc > 1:2182502/1‑76 (MQ=255) aTCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgctcgct < 2:5676859/76‑1 (MQ=255) aTCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgctcgct > 1:5285590/1‑76 (MQ=255) aTCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACcgctcgct < 1:696410/76‑1 (MQ=255) tCCGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTg > 2:3428745/1‑76 (MQ=255) ccGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTgg > 2:2560294/1‑76 (MQ=255) cGTCGGTCGTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACCACTAAACCGATCGCTGgc > 1:1239374/1‑76 (MQ=255) gtcggtcgTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGgcg > 1:2372288/1‑76 (MQ=255) gtcggtcgTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGgcg > 2:489572/1‑76 (MQ=255) ggtcgTTCCGTTTGCCTCGGCCTTTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAg > 2:1388743/1‑76 (MQ=255) gtcgTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAgg < 2:6112731/76‑1 (MQ=255) gtcgTTCCGTGTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAgg < 2:1025431/76‑1 (MQ=255) tcgTTCCGTTTGCCTCGGCCCCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGt < 2:2364297/76‑1 (MQ=255) cgTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTa > 1:4949083/1‑76 (MQ=255) cgTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTa < 2:5958989/76‑1 (MQ=255) gtcccGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTaa < 1:25729/73‑1 (MQ=255) gTTCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTaa > 1:2949002/1‑76 (MQ=255) gTTCCGTTTGCCTCGGCCTCGCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTaa < 2:5249740/76‑1 (MQ=255) ttCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAg > 1:4637820/1‑76 (MQ=255) tCCGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGc > 1:5062686/1‑76 (MQ=255) tCCGTTTGCCGCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGc < 1:6256548/76‑1 (MQ=255) ccttttGCCCCGGCCCCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCa < 1:4343796/73‑1 (MQ=255) ccGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCa > 2:5838588/1‑76 (MQ=255) cGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCaa > 1:2203624/1‑76 (MQ=255) cGTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCaa > 2:5679214/1‑76 (MQ=255) gTTTGCCTCGGCCTCTCCCGCCCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCaaa < 1:5703602/76‑1 (MQ=255) gTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCaaa > 2:1880258/1‑76 (MQ=255) gTTTGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGGACGCaaa > 1:525386/1‑76 (MQ=255) gTTTGCCCCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCaaa < 1:858496/76‑1 (MQ=255) tttGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCaaaa < 2:1113838/76‑1 (MQ=255) ttGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAAc < 2:3751145/76‑1 (MQ=255) ttGCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAAc > 1:3019827/1‑76 (MQ=255) gCCTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCACAACCg > 1:2084136/1‑76 (MQ=255) ccTCGGCCTCTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAACCGc < 2:3944636/76‑1 (MQ=255) cTCGGCCTCTCCCGACCCGCGA‑CTGTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAACCGcc < 2:4654538/76‑1 (MQ=255) cTCGGCCTCTCCAGACCCGCGA‑CTTTTCCCCCTCCAACAACTAGACCCCTCGCTGGCGCACGTAAGGAAAACTGcc > 2:2670861/1‑76 (MQ=255) tCGGCCTCCCCCGCCCCGCGT‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAACCGCca < 1:3142827/76‑1 (MQ=255) tCGGCCTCCCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAACCGCca < 1:1448864/76‑1 (MQ=255) | GATATCAACACTTATATTTTTGATATGTTGCAGGCCAGTCGCGATCCGTCGGTCGTTCCGTTTGCCTCGGCCTTTCCCGACCCGCGA‑CTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAACCGCCACA > REL606/1480374‑1480517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |