| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 1,936,315 | G→A | G196G (GGC→GGT) | torY ← | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,936,315 | 0 | G | A | 99.5% | 746.0 / ‑5.7 | 187 | G196G (GGC→GGT) | torY | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (101/85); total (102/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 190 total aligned reads displayed.
CGGTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGC > REL606/1936242‑1936387 | cgGTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCAcc > 2:4719678/1‑76 (MQ=255) ggTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCa < 2:5491294/76‑1 (MQ=255) gtgtGATCGGTACCAGGCTTCCCGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCAt < 2:1069689/76‑1 (MQ=255) gTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCAt > 2:5855909/1‑76 (MQ=255) gTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCAt < 2:5131671/76‑1 (MQ=255) tGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCAtt > 2:193728/1‑76 (MQ=255) gagaTCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTa < 1:5616918/76‑1 (MQ=255) agaTCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAg < 2:4784491/76‑1 (MQ=255) agaTCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAg < 2:4251522/76‑1 (MQ=255) aTCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTc > 1:73407/1‑76 (MQ=255) aTCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTc < 1:251526/76‑1 (MQ=255) tCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCa < 2:3091776/76‑1 (MQ=255) tCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCa < 1:4535798/76‑1 (MQ=255) tCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCa < 1:6022747/76‑1 (MQ=255) ggTACCAGGATTCCCGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACt < 1:3211530/76‑1 (MQ=255) ggTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACt < 2:5497245/76‑1 (MQ=255) ggTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACAATTAGTCAca > 2:1434383/1‑75 (MQ=255) gTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTg > 2:3777028/1‑76 (MQ=255) gTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTg > 1:1778202/1‑76 (MQ=255) tACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGa > 1:3286094/1‑76 (MQ=255) tACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGa < 1:6229909/76‑1 (MQ=255) tACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGa > 1:5192632/1‑76 (MQ=255) tACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGa > 1:388067/1‑76 (MQ=255) aCCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGaa > 2:676577/1‑76 (MQ=255) aCCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGaa < 2:5694476/76‑1 (MQ=255) ccAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAg > 2:2437464/1‑76 (MQ=255) gaGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGt < 2:3542980/75‑1 (MQ=255) aGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTa < 1:4180573/76‑1 (MQ=255) aGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTa > 1:948007/1‑76 (MQ=255) cACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTc > 2:1353460/1‑76 (MQ=255) aCGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCt < 1:3355269/76‑1 (MQ=255) aCGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCt > 2:5308031/1‑76 (MQ=255) cgttAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTg < 1:1659663/73‑1 (MQ=255) cGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTg < 1:2232332/76‑1 (MQ=255) ggTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGa > 2:3463039/1‑76 (MQ=255) gTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGAc > 2:5905805/1‑76 (MQ=255) tAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACt > 1:4086472/1‑76 (MQ=255) aGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACtt < 1:1015550/76‑1 (MQ=255) gCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACttt > 1:3955735/1‑76 (MQ=255) ccAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTc > 2:73960/1‑76 (MQ=255) cAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTcc > 2:6140522/1‑76 (MQ=255) cAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTcc < 2:1217312/76‑1 (MQ=255) cAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTcc < 1:2500066/76‑1 (MQ=255) aGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCa < 1:1349399/76‑1 (MQ=255) aGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCa < 2:1485041/76‑1 (MQ=255) aGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCa > 2:2133010/1‑76 (MQ=255) gCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAg > 2:2606183/1‑76 (MQ=255) gCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAg < 2:4561144/76‑1 (MQ=255) cTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGc < 1:225538/76‑1 (MQ=255) cGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTc > 1:5815287/1‑76 (MQ=255) cGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTc > 2:251361/1‑76 (MQ=255) cGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTc > 2:4398874/1‑76 (MQ=255) cGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTc < 2:2420476/76‑1 (MQ=255) gCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCa < 1:2848418/76‑1 (MQ=255) gCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCa > 2:2049081/1‑76 (MQ=255) ccTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCAt > 2:1720974/1‑76 (MQ=255) tATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgc < 1:3492792/76‑1 (MQ=255) tATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgc > 1:1891852/1‑76 (MQ=255) tATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgc > 2:4442307/1‑76 (MQ=255) aTGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgcg < 1:5274742/76‑1 (MQ=255) tGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgcgc > 1:5728471/1‑76 (MQ=255) tGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgcgc > 1:3864601/1‑76 (MQ=255) cGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGcgccg > 2:1585256/1‑76 (MQ=255) gagaAGTTTTGAAAGGATAAATATGTGCGCCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgcgcgcc > 2:2981247/1‑73 (MQ=255) aaGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGtt < 1:4646785/76‑1 (MQ=255) aaGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGtt < 1:4838900/76‑1 (MQ=255) aaGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGtt < 1:634041/76‑1 (MQ=255) aaGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGtt < 2:3343147/76‑1 (MQ=255) ttttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTc > 1:5568815/1‑76 (MQ=255) ttttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTc > 1:4330104/1‑76 (MQ=255) ttttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTc > 1:4222718/1‑76 (MQ=255) tttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCa > 1:3640499/1‑76 (MQ=255) ttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCAt > 2:5757263/1‑76 (MQ=255) ttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCAt < 2:5400974/76‑1 (MQ=255) ttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCAt > 1:2239456/1‑76 (MQ=255) ttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCAt > 1:5876431/1‑76 (MQ=255) aaaGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATcaa > 2:3049940/1‑74 (MQ=255) aaGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAt < 2:5589304/76‑1 (MQ=255) ggATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAttt > 2:6004839/1‑76 (MQ=255) gATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAtttt > 1:145573/1‑76 (MQ=255) aTAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAttttt < 1:6163062/76‑1 (MQ=255) aTAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAttttt < 2:3145754/76‑1 (MQ=255) aTAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAttttt < 1:4575652/76‑1 (MQ=255) aTAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAttttt > 2:2172996/1‑76 (MQ=255) aaTATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAtt > 2:428669/1‑76 (MQ=255) aaTATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAtt > 1:365217/1‑76 (MQ=255) aaTATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAtt > 2:6289334/1‑76 (MQ=255) aaTATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAtt > 1:4995007/1‑76 (MQ=255) atatGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAttt > 2:6074715/1‑76 (MQ=255) tatGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTc < 2:3640550/76‑1 (MQ=255) tatGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTc > 2:3268016/1‑76 (MQ=255) tatGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTc > 2:1128961/1‑76 (MQ=255) atGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCt > 2:5365956/1‑76 (MQ=255) atGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCt > 1:5436215/1‑76 (MQ=255) atGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCt < 1:2205944/76‑1 (MQ=255) tgtgCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTg < 1:2721261/76‑1 (MQ=255) tgtgCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTg > 2:5604546/1‑76 (MQ=255) tgtgCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTg < 2:3333179/76‑1 (MQ=255) tgCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGc > 1:1022562/1‑76 (MQ=255) tgCACCATTAGTCACTGAAGTAGCGGTCTAACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGc > 1:200276/1‑76 (MQ=255) | CGGTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGC > REL606/1936242‑1936387 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |