| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,751,297 | C→T | A71V (GCC→GTC) | dfp → | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,751,297 | 0 | C | T | 99.2% | 445.4 / ‑3.8 | 120 | A71V (GCC→GTC) | dfp | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (45/73); total (47/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.84e-01 | |||||||||||
Only 100 of 141 total aligned reads displayed.
ATCACCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGCCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGAT > REL606/3751224‑3751369 | aTCACCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCg > 1:4063491/1‑76 (MQ=255)aTCACCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCg < 2:6093592/76‑1 (MQ=255) tCACCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGCAGTCGc > 1:5497764/1‑76 (MQ=255) tCACCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGc < 1:5675304/76‑1 (MQ=255) cACCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCt < 1:3951000/76‑1 (MQ=255) cACCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCt < 1:993795/76‑1 (MQ=255) aCCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTa < 1:3766381/76‑1 (MQ=255) aCCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTa > 1:426288/1‑76 (MQ=255) aCCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTa > 2:2241621/1‑76 (MQ=255) cccACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATg < 1:3663911/76‑1 (MQ=255) cccACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATg < 1:471326/76‑1 (MQ=255) acgtAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGCCCCGGCAGCCGAAGTCGCTATGGGc < 2:6208405/73‑1 (MQ=255) aCTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGc > 2:5830039/1‑76 (MQ=255) cTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGcc > 1:3610523/1‑76 (MQ=255) cTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGcc > 2:6042338/1‑76 (MQ=255) cTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGGCGCTATGGGcc > 1:4184342/1‑76 (MQ=255) cTTAGCTTGCAGGCGGGTTCTGGTTATCCCGTTTCCGACAGGTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGcc > 1:988874/1‑76 (MQ=255) ttAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCa < 2:3569233/76‑1 (MQ=255) ttAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGGCGCCATGGGCCa > 2:720750/1‑76 (MQ=255) tAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCat < 2:1924428/76‑1 (MQ=255) aGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCcta > 1:1237926/1‑76 (MQ=255) gCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCatat > 1:1177068/1‑76 (MQ=255) cTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGGCGAAGTCGCTATGGGCCattat > 2:2941311/1‑73 (MQ=255) cTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATAtt < 1:5952142/76‑1 (MQ=255) ttGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTg < 1:4986509/76‑1 (MQ=255) ttGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTg < 2:897275/76‑1 (MQ=255) ttGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTg > 1:41998/1‑76 (MQ=255) ttGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTg < 1:2873062/76‑1 (MQ=255) tGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGa > 1:5358136/1‑76 (MQ=255) tGCAGGCGGTTTCGGGTTATCCCGTTTCCGGCAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGa < 2:5709158/76‑1 (MQ=255) aGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCt < 2:4198422/76‑1 (MQ=255) aGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCt < 1:3201107/76‑1 (MQ=255) aGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCt > 1:521913/1‑76 (MQ=255) ggCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTg < 2:1643681/76‑1 (MQ=255) gCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTgg > 1:1709706/1‑76 (MQ=255) gTTTCTGTTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTa < 2:4380645/76‑1 (MQ=255) gTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTa < 2:5472266/76‑1 (MQ=255) gTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTa < 2:4663727/76‑1 (MQ=255) gTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTa > 1:5849932/1‑76 (MQ=255) gTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTa > 2:1400708/1‑76 (MQ=255) tttCTGGTTAGCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTaa < 2:1896322/76‑1 (MQ=255) ttCTGTTTATCCCGTTCCCGACAGTTTGCTGGCCCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTaaa < 2:5131133/76‑1 (MQ=255) ttCTGGTTATCCCGTTTCCGACAGTTTGCTGGCCCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTaaa < 1:2057648/76‑1 (MQ=255) ttCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTaaa > 1:3016671/1‑76 (MQ=255) ttCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTaaa > 2:4243874/1‑76 (MQ=255) cTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGGAACTg > 1:4719442/1‑76 (MQ=255) tGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATTTTGATTTGGGGAAATgg > 1:3397067/1‑76 (MQ=255) tGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATgg < 1:2479352/76‑1 (MQ=255) tGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATgg > 2:657809/1‑76 (MQ=255) tGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCCAAGGCCCTATGGGCCATATTGGGCTGGGTAAATgg > 1:4930329/1‑76 (MQ=255) ggTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGGAAATggg > 1:5270210/1‑76 (MQ=255) tATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTg > 2:3523770/1‑76 (MQ=255) tATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTg < 1:1597631/76‑1 (MQ=255) aTCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGa > 1:414541/1‑76 (MQ=255) tCCCGTTTCCGACAGTTTGCTGGACCGGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGAt < 1:1891983/76‑1 (MQ=255) tCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGAt < 1:3778710/76‑1 (MQ=255) cccGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGAtt < 2:2379292/76‑1 (MQ=255) cacGTTGCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGAtt < 2:1534652/74‑1 (MQ=255) ccGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGAttt < 2:6293371/76‑1 (MQ=255) ccGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGAttt > 1:5874335/1‑76 (MQ=255) cGTTTCCGACAGTTTGCTGGACCCGGCAGCCGGAGTTGCTATGGGCCATATTGAGCTGGGGAAATGGGCTGATTTa > 2:1795812/1‑76 (MQ=255) gTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAg > 1:4415711/1‑76 (MQ=255) gTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAg < 1:537946/76‑1 (MQ=255) gTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAg < 1:5829258/76‑1 (MQ=255) gTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAg < 2:2873788/76‑1 (MQ=255) ttCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTg < 2:4242392/76‑1 (MQ=255) tCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGa < 1:666048/76‑1 (MQ=255) tCCGACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGa > 1:3082733/1‑76 (MQ=255) gACAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATtc < 1:321702/76‑1 (MQ=255) aCAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATtct < 1:6084133/76‑1 (MQ=255) aCAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATtct < 2:115450/76‑1 (MQ=255) aCAGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATtct > 1:2296414/1‑76 (MQ=255) aGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCg < 2:315340/76‑1 (MQ=255) aGTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCg < 1:518325/76‑1 (MQ=255) aGTTTCCTGGCCCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCg < 1:3211307/76‑1 (MQ=255) gTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGc > 2:4251702/1‑76 (MQ=255) gTTTGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGGAAATGGGCTGATTTAGTGATTCTCGc > 2:3538986/1‑76 (MQ=255) tttGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTTAGCTGGGGAAATGGGCTGATTTAGTGATTCTCGcc > 2:4371267/1‑76 (MQ=255) tttGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGcc > 2:5368196/1‑76 (MQ=255) ttGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGccc > 1:2188084/1‑76 (MQ=255) tGCTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGcccc < 1:2941311/76‑1 (MQ=255) cTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTg < 1:2818637/76‑1 (MQ=255) cTGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTg < 2:5845180/76‑1 (MQ=255) tGGACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGc > 1:5022555/1‑76 (MQ=255) ggACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGcc > 2:31893/1‑76 (MQ=255) ggACCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAAAGGGCTGATTTAGTGATTCTCTCCCCTGcc > 2:731386/1‑76 (MQ=255) aCCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCAc > 2:5297825/1‑76 (MQ=255) aCCCGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCAc > 2:5894601/1‑76 (MQ=255) cccGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACg < 1:4395853/76‑1 (MQ=255) cgggCAGCGGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACgg < 2:4112890/74‑1 (MQ=255) cgggCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACgg < 2:1441043/74‑1 (MQ=255) ccGGCAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACgg < 2:4789654/76‑1 (MQ=255) cAGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGa > 1:4706429/1‑76 (MQ=255) aGCCGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGAt > 1:785076/1‑76 (MQ=255) ccGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGAttt < 1:2607565/76‑1 (MQ=255) cGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTg > 1:6266749/1‑76 (MQ=255) cGAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTg > 1:3416494/1‑76 (MQ=255) gAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGa > 2:2514348/1‑76 (MQ=255) gAAGTCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGa > 1:6172243/1‑76 (MQ=255) aaGCCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGAt > 2:840247/1‑76 (MQ=255) | ATCACCCCACTTAGCTTGCAGGCGGTTTCTGGTTATCCCGTTTCCGACAGTTTGCTGGACCCGGCAGCCGAAGCCGCTATGGGCCATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGAT > REL606/3751224‑3751369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |