| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 54 (0.900) | 46/144 | 0.2 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 50 (0.840) | 42/144 | 0.3 | 97.9% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 1 (0.020) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
CGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772780‑2772924 | cGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCCCCGGCGCGGGGGACACCCCGAACGGGGGGGGAAAAacc > 2:1069420/1‑76 (MQ=37) aTTTTTATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCAtn < 1:355250/76‑2 (MQ=255) tGATTCATCGTGATGACCGGTTTATCCCCCCTGGCGCGGGGGACACCCTGAACGGGGGGGGAAAAACCCATAAgcg > 2:858797/1‑76 (MQ=255) ttCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACAGCCTGAACGGTGGGGAAAAACCTCATAAGCGATa < 1:1870390/76‑1 (MQ=37) ttCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTa < 1:1804710/76‑1 (MQ=255) ttCATCGTGATGACCGGTTTATCCCCCCCGGCGCGGGGGACAACCCGAACGGGGGGGGAAAACCCCCTAAGCGCTa > 1:1561562/1‑76 (MQ=255) tCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACtt < 1:728341/76‑1 (MQ=255) tCGTGATGACCGGTTTATCCCCGCGGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACtt < 1:1641185/76‑1 (MQ=255) cGTGATGACCGTTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTa < 1:523768/76‑1 (MQ=255) cGTGATGACCGGTTTATCCCCGTTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTa < 1:1485502/76‑1 (MQ=255) tgatgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAg < 1:1227638/76‑1 (MQ=255) gatgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGAGGGGAAAAACCCCCTAAGCGCTAACTTAAgg > 2:1375284/1‑76 (MQ=255) atgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTCAAggg < 1:1916603/76‑1 (MQ=255) gaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGtt < 1:338856/76‑1 (MQ=255) gaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGGGGGGGAAAACCCCATAAGCGCTAACTTAGGGGtg > 2:217560/1‑75 (MQ=37) cGGTTTATCCCCGCTGGCGCGGGGGACACCCTGAACGGGGGGGAAAAACCCCATAAGCGCTAACTTAAGGGGtgtg > 2:1735405/1‑76 (MQ=38) ggTTTATCTCCGCTGGCGCGCGGAACGATCTACACGGTGGGGCAAAACCCCATAAGCGCTGACGTAAGGGTTGTgg < 1:1968825/76‑1 (MQ=16) ggTTTATCCCCGCTGGCGCGGGGAACACCCTGATCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTgg < 1:891783/76‑1 (MQ=255) ggTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGTGAAAAACCCCATAAACGCTAACTTAAGGGTTGTgg > 2:1623448/1‑76 (MQ=255) ggTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGGGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTgg > 2:407613/1‑76 (MQ=255) tttCTCCCCGGCTGCGCGGGGAAACCCCTTAACGGTTGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa < 2:1366461/76‑1 (MQ=18) tttATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa < 2:1366451/76‑1 (MQ=255) ttATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 2:396095/76‑1 (MQ=255) ttATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:1368820/76‑1 (MQ=255) ttATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 2:1850408/1‑76 (MQ=255) tATCCCCGCTGGCGCGGGGGACACCCTGAACGGGGGGGGAAAAACCCATAAGCGCTAACTTAAGGGGTGTGGGAtt > 1:765961/1‑76 (MQ=25) tATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:373472/76‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 2:1912686/1‑76 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa > 2:1790518/1‑76 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 2:957154/76‑1 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa > 2:1837765/1‑76 (MQ=255) tCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTACGGGTTGTGGTATTAc > 2:902831/1‑76 (MQ=255) tCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc > 2:902851/1‑76 (MQ=255) cccGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc < 1:1317477/76‑1 (MQ=255) gCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAATGGTTGTGGTATTACGCCTg < 1:1735339/76‑1 (MQ=255) ggCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata > 2:659142/1‑76 (MQ=255) gcgcGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGntat < 1:1823863/76‑1 (MQ=255) gcgcGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGatat < 1:1518687/76‑1 (MQ=255) ggggAACACCCTGAGCGATAGGCAAAAACCCCATAAGCGCTAACTTAAGGGTTGTCGTATTACGCCTGATATGAtt < 1:98161/76‑1 (MQ=17) ggggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt > 2:554655/1‑76 (MQ=255) gggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 2:1517776/76‑1 (MQ=255) gggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 2:1134789/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAGAANCTCCATAAGCGCTAACTTAAGNGTTGTGGTATTACGCCTGATATGATTTa < 1:295988/76‑1 (MQ=18) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 2:1868915/76‑1 (MQ=255) gAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa > 1:1477964/1‑76 (MQ=255) gAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 2:1032039/76‑1 (MQ=255) gAACACCCTGAACGGTGGCGANAANCCCCATACGCGCTAACTTAAGNGTTGTGGNANTACGCCTGATATGATTTaa > 2:293173/1‑76 (MQ=18) aaCACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc > 2:1548533/1‑76 (MQ=255) aaCACCCTGAACGGTAGGGCAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATANGATTTAAc < 1:1964078/76‑1 (MQ=255) cacCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt < 2:1038596/76‑1 (MQ=255) cacCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt < 2:1038591/76‑1 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 2:1412712/76‑1 (MQ=255) cTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg > 1:1478373/1‑76 (MQ=255) cTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACACCTGATATGATTTAACGTGCCg > 1:1478386/1‑76 (MQ=255) gAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:977092/76‑1 (MQ=255) aCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 2:502071/76‑1 (MQ=255) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa < 1:1213805/76‑1 (MQ=255) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATGTAACGTGCCGATGaa < 1:178682/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 1:862741/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 1:1847073/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 1:207730/76‑1 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:1002526/76‑1 (MQ=40) tGGGGAAAAACACCATCAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 1:119957/1‑76 (MQ=255) gAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 2:112369/76‑1 (MQ=34) gAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 1:367985/76‑1 (MQ=34) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc > 1:958390/1‑76 (MQ=32) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc < 1:330729/76‑1 (MQ=32) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 1:1533845/76‑1 (MQ=31) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 1:1034156/76‑1 (MQ=31) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 1:1034151/76‑1 (MQ=31) | CGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772780‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |