New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 5598	434 (1.740)	9 (0.040) +AAATCCGAGCCGTA	3/122	16.6	2.9%	intergenic (+70/+83)	yaaX/yaaA	hypothetical protein/hypothetical protein
	?	REL606	= 2293898	300 (1.200)					intergenic (+48/‑194)	nrdA/nrdB	ribonucleotide‑diphosphate reductase alpha subunit/ribonucleotide‑diphosphate reductase beta subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/5561‑5598 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCTCAATATCAGATCTTACATGCGCCGC  <  REL606/2293898‑2293831                                       ||||||||||||||                                                                     ggcCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGGAGCCGTAGAGCCGTAGGCCGGATAAGGCGTT                                              <  2:6494733/73‑1   GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA                                                                                   <  1:5893204/37‑1   GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA                                                                                   >  2:5893204/1‑37    CCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA                                                                                   <  1:5834211/36‑1    CCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA                                                                                   >  2:5834211/1‑36       GATGCGACGCTGGCGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGAGCCGTAGGCCGGATAAGGCGTTTACGCt                                        >  2:6090112/1‑75        ATGCGACGCTGGCGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGAGCCGTAGGCCGGATAAGGGGGTTACGCtg                                       >  2:3087057/1‑74         TGCGACGCTGGCGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGAGCCGTAGGCCGGATAAGGGGGTTACGCCGC                                      >  2:4296700/1‑76          GCGACGCTGGCGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGAGCCGTAGGCCGGATAAGGCGTTTACGCTGCA                                     >  2:4918993/1‑76            GACGCTGGCGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGAGCCGTAGGCCGGATAAGGCGTTTACGCTGCATC                                   >  2:3517604/1‑76            GACGCTGGCGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGAGCCGTAGGCCGGATAAGGCGTTCACGCCGCATC                                   >  2:2804595/1‑76            GACGCTGGCGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGAGCCGTAGGCCGGATAAGGCGTTCACGCCGCATC                                   >  2:3679171/1‑76            GACGCTGGCGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGAGCCGTAGGCCCGATAAAGGGTTTACGCTGCAac                                   >  2:7072190/1‑74                                             GAGCCGTAGAGCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCCCGAAACCAGAGCGTACATGCGCCGC  >  1:902835/1‑76                                       ||||||||||||||                                                                     GCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/5561‑5598 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCTCAATATCAGATCTTACATGCGCCGC  <  REL606/2293898‑2293831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.