| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2056287 | 195 (0.780) | 77 (0.330) +CTTA |
18/142 | 10.7 | 15.6% | intergenic (‑191/+2) | cpsG/cpsB | phosphomannomutase/mannose‑1‑phosphate guanyltransferase |
| ? | REL606 | 4274785 = | 688 (2.760) | intergenic (+58/+473) | gltP/yjcO | glutamate/aspartate:proton symporter/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCACGCCGCATCCGACAAACAGCGCCTGATGCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2056252‑2056287‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT > REL606/4274785‑4274859 |||| TCACGCCCCAGCCGAC‑ACCAGCGCCTGATGCGACGCTTACCGCGTCTTGTCAGGCCAACGCCAGACAGCGCAATAG < 2:6745362/76‑1 caaCGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTT < 2:994244/73‑1 caaCGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCCACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTT < 2:681583/73‑1 caaCGCCTAATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAG < 2:781375/65‑1 caaCGCCGGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTT < 2:2570636/73‑1 acCGCCTGAGGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTT < 1:14061/74‑1 aaCGCCTGGTGCGCCGCTTACCGCGTCTTATCAGGCATAGGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTT < 1:4696910/74‑1 aaCGCCTGATGCGACGCTTACCGCGTTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTT < 1:644286/74‑1 aaCGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTT < 1:6819806/74‑1 aaCGCCGGATGCGCCGCTTACGGCGTCTTATCAGCCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTT < 1:6895311/74‑1 agcCCTGATGCGACGTTTCCCGCGTCTTATCGGGCCCACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG < 1:6500759/73‑1 aCGCCTGATGCGCCGCTTACCGCGTCTTTTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG < 1:1566552/75‑1 aCGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG < 1:5683682/75‑1 CGCCTGATGCGCCGTTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT < 1:1658028/76‑1 CGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT < 1:6763845/76‑1 cCCTGATGCGACGCTTACCGCTTCTTACCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTA < 2:1103994/75‑1 cCCTGAGCCGACGCTTACCGGGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTA < 1:7701502/75‑1 GCCTGATGCGCCGTTTTCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTA < 1:54285/76‑1 GCCTGATGCGCCGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTA < 2:6607210/76‑1 GCCTGATGCGACGTTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTA < 1:6350012/76‑1 GCCTGATGCGACGCTTCCCGCGTCTTATCAGCCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTA < 1:2338026/76‑1 GCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTA < 2:805818/76‑1 GCCTGAGGCGACGCTTACCGCGTCTTACCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTA < 2:5826051/76‑1 CCTGATGCGCCGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG < 2:5291451/76‑1 CCTGATGCGACGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG < 2:2240818/76‑1 CCTGATGCGACGCTTACCGCGTTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG < 2:5377742/76‑1 cgGATGCGACGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATT < 1:4685835/57‑1 CTGATGCGACGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGG < 1:5885470/76‑1 CTGATGCGACGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG < 1:4838811/56‑1 CTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGG < 2:1005317/76‑1 CTGAGGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGG < 1:7432170/76‑1 ttATGCGCCGTTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGT < 1:4195974/74‑1 TGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGT < 1:5313911/76‑1 TGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGT < 2:6488022/76‑1 TGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAT < 1:3275548/67‑1 ggTGCGACGTTTTCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTC < 1:8185748/74‑1 GATGGGACGTTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTC < 1:6283317/76‑1 GATGCGACGCTTACCGCGTCTTATCAGGCCTCCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTT < 1:2322491/69‑1 ATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCG < 1:80603/76‑1 tcCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG < 1:3960494/74‑1 gGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG < 1:7638372/75‑1 TGCGCCGTTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG < 1:5342206/76‑1 TGCGCCGTTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG < 2:3060910/76‑1 TGCGCCGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG < 1:3931451/76‑1 TGCGCCGCTGACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTA < 1:6316060/70‑1 TGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG < 1:2855395/76‑1 GCGCCGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGA < 1:209885/76‑1 gcACGCTTAGCGCGTTTAATCGGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT < 2:4134687/74‑1 cgcCGCTTAGCGCGTCTTATCAGACCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT < 1:7838279/73‑1 cgcCGCTTACGGCGTTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT < 1:700228/73‑1 CGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT < 1:4319418/76‑1 CGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT < 1:1568891/76‑1 CGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA < 1:7786484/61‑1 CGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATT < 2:5238689/53‑1 gcCGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATA < 1:3860507/74‑1 GACTCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATA < 2:5941499/76‑1 GACGCTTACCGCGTTTTATCAGGCCTACCCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATA < 2:4802364/76‑1 GACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATA < 1:4750750/76‑1 GACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATA < 1:4124777/76‑1 GACGCTTACCCCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATA < 1:8072635/76‑1 cCGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA < 2:6387604/75‑1 cCGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA < 1:3055006/75‑1 accCTTAGCGCTTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA < 2:2691603/73‑1 ACGCTTACCGCTTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA < 2:3427932/76‑1 ACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA < 1:4388750/76‑1 ACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA < 1:2615873/76‑1 ACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA < 1:420843/76‑1 ACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA < 1:3884867/76‑1 ACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA < 2:5897374/76‑1 ACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA < 2:1048201/76‑1 ctCTTAGCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG < 2:3296179/74‑1 CGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG < 2:754599/76‑1 CGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG < 1:3318313/76‑1 CGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG < 2:7015571/76‑1 CGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG < 1:4540491/76‑1 CGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG < 1:8233106/76‑1 ctTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG < 1:3434634/74‑1 GCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG < 1:7474733/76‑1 GCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG < 2:3354757/76‑1 GCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG < 1:4233558/76‑1 tTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGC < 1:5851330/75‑1 CTTCCCGCGTCTTATCAGGCTTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGC < 1:4309926/76‑1 CTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGC < 1:2738792/76‑1 CTTACCGCGTCTTACCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGC < 1:2511710/76‑1 TTAGCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCG < 2:7164405/76‑1 TTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCG < 1:4154652/76‑1 TACCGCGTTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGC < 2:2047059/50‑1 TACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGT < 2:7000091/76‑1 ACCGCGTCTTATCAGGCTTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT < 1:2234195/76‑1 ACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT < 1:970403/76‑1 ACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT < 1:808264/76‑1 ACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTG < 1:3244033/52‑1 |||| TCACGCCGCATCCGACAAACAGCGCCTGATGCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2056252‑2056287‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT > REL606/4274785‑4274859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |