New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2293898	300 (1.200)	11 (0.050) +TACGGCTCGGA	3/128	17.0	3.2%	intergenic (+48/‑194)	nrdA/nrdB	ribonucleotide‑diphosphate reductase alpha subunit/ribonucleotide‑diphosphate reductase beta subunit
	?	REL606	= 2928231	475 (1.910)					intergenic (+185/+11)	ygfZ/yqfA	putative global regulator/predicted oxidoreductase, inner membrane subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2293831‑2293898 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAT  <  REL606/2928231‑2928191                                                                     |||||||||||                                          GCGGCGCATGTACGCTCTGGTTTCGGGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCTACGGCTC                                              <  1:902835/76‑1                                  gtTGCAGCGTAAACCCTTTATCGGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTC             <  2:7072190/74‑1                                  GATGCGGCGTGAACGCCTTATCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTC             <  2:2804595/76‑1                                  GATGCGGCGTGAACGCCTTATCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTC             <  2:3679171/76‑1                                  GATGCAGCGTAAACGCCTTATCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTC             <  2:3517604/76‑1                                    TGCAGCGTAAACGCCTTATCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGC           <  2:4918993/76‑1                                     GCGGCGTAACCCCCTTATCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCA          <  2:4296700/76‑1                                      caGCGTAACCCCCTTATCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCAT         <  2:3087057/74‑1                                       aGCGTAAACGCCTTATCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATC        <  2:6090112/75‑1                                            gacCGCTTTACCCGCCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA   <  2:4574055/73‑1                                            gacCGCCTTACCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA   <  2:6962212/73‑1                                             AACGCCTTATCCGGCCTACGGCTCTACGGCTCCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGgcc  >  2:6494733/1‑73                                                                     |||||||||||                                          GCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2293831‑2293898 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAT  <  REL606/2928231‑2928191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.