| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC | REL606 | 547,700 | Δ42,623 bp | between IS1 | [nmpC]–[insK‑1] | 44 genes [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, ECB_00513, ECB_00514, ECB_00515, ECB_00516, ECB_00517, appY, ompT, envY, ybcH, nfrA, nfrB, nfrB, ECB_00524, yhhI, ECB_00526, ECB_00527, ECB_00528, ECB_00529, ECB_00530, cusS, cusR, cusC, ylcC, cusB, cusA, pheP, ybdG, nfnB, ybdF, ybdJ, ybdK, insJ‑1, insK‑1, insB‑7, insA‑7, [insK‑1] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 546980–547700 | 590276–588494 | 40795–43297 | 101 [97] | [91] 98 | [insB‑6]–insA‑7 | [insB‑6],insA‑6,nmpC,ybcR,ybcS,ybcT,ybcU,ECB_00510,nohB,ECB_00512,ECB_00513,ECB_00514,ECB_00515,ECB_00516,ECB_00517,appY,ompT,envY,ybcH,nfrA,nfrB,nfrB,ECB_00524,yhhI,ECB_00526,ECB_00527,ECB_00528,ECB_00529,ECB_00530,cusS,cusR,cusC,ylcC,cusB,cusA,pheP,ybdG,nfnB,ybdF,ybdJ,ybdK,insJ‑1,insK‑1,insB‑7,insA‑7 |
GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAATAT > REL606/590250‑590352 | gATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGc > 1:4740355/1‑76 (MQ=31)gATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGc > 1:2436058/1‑76 (MQ=31)gATAGAAACAAAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGc < 1:4922429/76‑1 (MQ=14)aaTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGc < 2:3977388/75‑1 (MQ=14) aTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCg > 1:1163357/1‑76 (MQ=32) aTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCg > 2:7510241/1‑76 (MQ=32) aTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCg > 1:13839/1‑76 (MQ=32) aTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCg > 1:4629967/1‑76 (MQ=32) aTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCg > 1:509975/1‑76 (MQ=32) aTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCg > 1:431654/1‑76 (MQ=32) aGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGaa > 2:7363710/1‑76 (MQ=34) aGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGaa > 1:7454278/1‑76 (MQ=34) aGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGaa > 2:2484345/1‑76 (MQ=34) aGAAAAACAAGCCACCGGAGCACCTCAAAAACACCATCATGCACTAAATCAGTAAGTTGGCAGCATCACCAGCGaa < 1:7083846/76‑1 (MQ=11) gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAAc > 2:1077015/1‑76 (MQ=35) aaaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACt > 2:2386919/1‑76 (MQ=38) aaaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACt < 2:3342160/76‑1 (MQ=38) aaaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACt < 1:7353283/76‑1 (MQ=38) aaaCAAAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACt < 1:7064932/76‑1 (MQ=255) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTg < 1:4966225/76‑1 (MQ=39) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTg < 1:214468/76‑1 (MQ=39) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTg > 2:3915145/1‑76 (MQ=39) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGa < 1:3900495/76‑1 (MQ=40) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGa < 1:7062231/76‑1 (MQ=40) caaaaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGaa < 1:927049/73‑1 (MQ=255) caaaaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGaa < 1:1564071/73‑1 (MQ=255) cAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGaa < 2:3809626/76‑1 (MQ=255) cAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGaa > 2:1701244/1‑76 (MQ=255) aaaaaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGaa < 2:7363586/73‑1 (MQ=255) aaaaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAg < 1:3473226/74‑1 (MQ=255) aaaaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAg < 1:5928/74‑1 (MQ=255) aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAg > 1:5247503/1‑76 (MQ=255) aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGa > 2:3773070/1‑76 (MQ=255) aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGa > 1:1225825/1‑76 (MQ=255) aGCCGCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGAt < 1:3238341/76‑1 (MQ=255) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGAt < 1:5159652/76‑1 (MQ=255) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGAt < 1:1603298/76‑1 (MQ=255) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGAt < 1:6246128/76‑1 (MQ=255) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGAt < 1:449499/76‑1 (MQ=255) gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATg < 1:3200457/76‑1 (MQ=255) gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATg < 2:7332690/76‑1 (MQ=255) gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATg < 1:6369097/76‑1 (MQ=255) gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATg < 1:6133368/76‑1 (MQ=255) ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGc > 1:2984368/1‑76 (MQ=255) cACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCt > 1:952208/1‑76 (MQ=255) cACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCt > 2:5600801/1‑76 (MQ=255) aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTg > 2:4494332/1‑76 (MQ=255) aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTg > 1:1360713/1‑76 (MQ=255) aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTg > 1:3025636/1‑76 (MQ=255) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGt > 1:4061173/1‑76 (MQ=255) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGt < 1:2876072/76‑1 (MQ=255) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGt < 1:4236746/76‑1 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGtt < 1:6782848/76‑1 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGtt > 1:7081290/1‑76 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGtt < 1:6678495/76‑1 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGtt > 1:1629983/1‑76 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGtt < 2:24798/76‑1 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGtt > 1:6405701/1‑76 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGtt < 1:771700/76‑1 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGtt < 1:5871805/76‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTa < 2:260664/76‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTa > 2:4011769/1‑76 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTa < 2:6322879/76‑1 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTAc < 1:3313737/76‑1 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTAc > 2:5414310/1‑76 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTAc < 1:713834/76‑1 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTAc < 1:4165802/76‑1 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTAc < 1:6814817/76‑1 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTAc < 1:6431078/76‑1 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACg < 1:2591338/76‑1 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACg < 2:1783473/76‑1 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACgg < 1:2898816/76‑1 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACgg < 2:63713/76‑1 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACgg < 1:385982/76‑1 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACgg < 1:853904/76‑1 (MQ=255) cACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGa > 1:2287437/1‑76 (MQ=255) cACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGa > 2:4755849/1‑76 (MQ=255) cACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGa > 1:4243158/1‑76 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGaa > 1:2989540/1‑76 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGaa > 2:3519935/1‑76 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGaa < 1:371133/76‑1 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGaa > 1:5597888/1‑76 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGaa < 2:516431/76‑1 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAat > 2:3313356/1‑76 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAat > 2:7232909/1‑76 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAat < 2:4186737/76‑1 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAGGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAata > 2:1835819/1‑76 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAata < 2:1280340/76‑1 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAata > 2:3126483/1‑76 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAata > 2:7463381/1‑76 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAata < 1:5950741/76‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAatat < 1:1275971/76‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAatat < 2:4757072/76‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAatat < 2:4513914/76‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAatat < 2:1780619/76‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAatat < 1:771361/76‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAatat < 1:6458301/76‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAatat > 1:6179117/1‑76 (MQ=255) | GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGCGAACTGAAGGATGCTGTTACGGAATAT > REL606/590250‑590352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |