| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 1,372,511 | G→A | A18A (GCG→GCA) | ycjP → | predicted sugar transporter subunit: membrane component of ABC superfamily |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,372,511 | 0 | G | A | 99.5% | 859.3 / NA | 210 | A18A (GCG→GCA) | ycjP | predicted sugar transporter subunit: membrane component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (114/95); minor base T (0/1); total (114/96) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 211 total aligned reads displayed.
CAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAAGAGGC > REL606/1372438‑1372582 | cAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACt > 2:3577694/1‑76 (MQ=255)cAGGAAACCGGTGAACCTCAATGGCAACAAATAAACGCACCCTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACt < 1:4616393/76‑1 (MQ=255) aGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTg < 2:7691250/76‑1 (MQ=255) aGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTg > 1:4518045/1‑76 (MQ=255) gAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGtt < 1:2965087/76‑1 (MQ=255) aaaCGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGttt < 2:81561/76‑1 (MQ=255) aaCGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTtc < 2:4508095/76‑1 (MQ=255) aCGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTtct > 1:7085901/1‑76 (MQ=255) cGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTtctc < 2:1122049/76‑1 (MQ=255) gggTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtca > 1:3187277/1‑76 (MQ=255) gggTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtca > 1:3101276/1‑76 (MQ=255) ggTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcat < 2:32139/76‑1 (MQ=255) gTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcatc > 1:1249410/1‑76 (MQ=255) gTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcatc < 2:3242133/76‑1 (MQ=255) gAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcatcat < 1:5410894/76‑1 (MQ=255) gAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcatcat > 2:5218810/1‑76 (MQ=255) aaCCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcatcatc > 2:6095078/1‑76 (MQ=255) ccTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCAc < 1:2748259/76‑1 (MQ=255) cTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACg < 1:7039160/76‑1 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCt > 1:1129972/1‑76 (MQ=255) aaTGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCCCTGTTTCTCATCATCACGCTg > 2:1320831/1‑76 (MQ=255) aaTGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTg > 1:7571810/1‑76 (MQ=255) tGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGtt < 1:6792635/76‑1 (MQ=255) tGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGtt > 2:1132455/1‑76 (MQ=255) caacaaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTcc > 2:1567377/1‑76 (MQ=255) aacaaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCa < 2:536634/76‑1 (MQ=255) acaaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAt > 2:6158418/1‑76 (MQ=255) caaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCTGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtt < 2:2901308/76‑1 (MQ=255) caaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtt > 2:6680427/1‑76 (MQ=255) caaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtt < 2:7488983/76‑1 (MQ=255) aaaTAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAttt > 2:4313096/1‑76 (MQ=255) aaTAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtttt > 2:4811634/1‑76 (MQ=255) aaTAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtttt > 1:5435862/1‑76 (MQ=255) aaTAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtttt > 1:3907945/1‑76 (MQ=255) aTAAACGGACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAttttt > 2:347083/1‑76 (MQ=255) tAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtttttt > 1:2650430/1‑76 (MQ=255) tAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtttttt < 1:4677231/76‑1 (MQ=255) aaaCGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTtg > 2:1491013/1‑76 (MQ=255) aaaCGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTtg > 1:2829039/1‑76 (MQ=255) aaCGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt < 2:4844935/76‑1 (MQ=255) aCGCAGACTCAGTCGCATCGCTGTTTACTTCGGGCTGGCACTGTGTCTCATGGTCACGCTGTTTCCATTTTTtgtg < 2:5634802/76‑1 (MQ=255) cGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGa > 2:4936439/1‑76 (MQ=255) cacaCTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATg > 2:6692902/1‑76 (MQ=255) acTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTTATGCtg > 1:1445728/1‑76 (MQ=255) acTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtg > 1:6962197/1‑76 (MQ=255) acTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtg < 2:4061394/76‑1 (MQ=255) cAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCTTTTTTTGTGATGCtgatg < 1:3512850/76‑1 (MQ=255) cAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtgatg > 2:5940798/1‑76 (MQ=255) cAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtgatg < 1:6998162/76‑1 (MQ=255) aGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtgatga < 1:5099516/76‑1 (MQ=255) aGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtgatga > 2:475419/1‑76 (MQ=255) gTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGAc < 2:1766799/76‑1 (MQ=255) cGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCt > 2:2962516/1‑76 (MQ=255) cATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCg < 2:2645228/76‑1 (MQ=255) cATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCg > 2:5482348/1‑76 (MQ=255) cATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCg > 2:1630710/1‑76 (MQ=255) aTCGGTTTTTACTGCGGGCTGGCACTGTTTGTCATCATCACGCTGTCTCCATTTGTTGTGATGCTGTTGACCTctg > 2:7422605/1‑74 (MQ=255) aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt > 1:1595413/1‑76 (MQ=255) aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt > 1:5486972/1‑76 (MQ=255) aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt > 1:5870305/1‑76 (MQ=255) aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt > 1:6504458/1‑76 (MQ=255) aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt > 1:6709676/1‑76 (MQ=255) aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCACCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt < 1:5645474/76‑1 (MQ=255) cGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTc > 2:2383357/1‑76 (MQ=255) cGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTc < 1:864446/76‑1 (MQ=255) cGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTc < 1:3015254/76‑1 (MQ=255) ggTTTTTACTGCGGGCTGTCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCa < 1:5569171/76‑1 (MQ=255) ggTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCa > 1:6608039/1‑76 (MQ=255) ggTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCa > 2:5552949/1‑76 (MQ=255) ggTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCa > 1:1500613/1‑76 (MQ=255) tttttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAg > 1:4941718/1‑76 (MQ=255) ttttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAgg < 1:205378/76‑1 (MQ=255) ttttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAgg > 1:4163162/1‑76 (MQ=255) tttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAggg > 2:6829416/1‑76 (MQ=255) tttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAggg > 1:3599697/1‑76 (MQ=255) tttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAggg < 2:1052160/76‑1 (MQ=255) ttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGgc > 2:7130861/1‑76 (MQ=255) ttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGgc < 1:1912122/76‑1 (MQ=255) tACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGgcg < 2:3501217/76‑1 (MQ=255) cTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGcgcg > 1:2279188/1‑76 (MQ=255) cTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGcgcg < 1:4079193/76‑1 (MQ=255) cTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGcgcg > 2:4199783/1‑76 (MQ=255) cTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGcgcg < 2:3827438/76‑1 (MQ=255) tGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGa < 1:431768/76‑1 (MQ=255) cGGGCTGGCTCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGaaa < 1:3287469/76‑1 (MQ=255) cGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGaaa > 2:2301994/1‑76 (MQ=255) cGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGaaa > 2:7468874/1‑76 (MQ=255) cGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGaaa < 1:7683959/76‑1 (MQ=255) gggCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAag > 2:2163841/1‑76 (MQ=255) gggCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAag < 1:761389/76‑1 (MQ=255) ggCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAaga < 1:5132386/76‑1 (MQ=255) ggCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAaga < 2:118535/76‑1 (MQ=255) ggCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAaga < 2:3130999/76‑1 (MQ=255) gCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAagag > 2:3609364/1‑76 (MQ=255) gCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAagag > 1:1272599/1‑76 (MQ=255) gCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAagag < 1:7698655/76‑1 (MQ=255) gCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAagag > 2:6443229/1‑76 (MQ=255) cTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAAGAgg > 2:2975694/1‑76 (MQ=255) tGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGACAGAGGc > 1:4577924/1‑76 (MQ=255) tGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAAGAGGc > 1:4733252/1‑76 (MQ=255) | CAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAAGAGGC > REL606/1372438‑1372582 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |