Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 1,305,969 Δ1 bp coding (271/1461 nt) cls ← cardiolipin synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6061,305,9690T.98.7% 761.5 / 2.3 154coding (271/1461 nt)clscardiolipin synthetase
Reads supporting (aligned to +/- strand):  ref base T (2/0);  new base . (92/60);  total (94/60)
Fisher's exact test for biased strand distribution p-value = 5.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 155 total aligned reads displayed.

AGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGATATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCTCAGC  >  REL606/1305898‑1306038
                                                                       |                                                                     
aGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCt                                                                  >  2:1700534/1‑76 (MQ=255)
 gCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCtt                                                                 <  2:2981498/76‑1 (MQ=255)
 gCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCtt                                                                 <  2:5140174/76‑1 (MQ=255)
  cGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTa                                                                >  1:5816392/1‑76 (MQ=255)
   gATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTAc                                                               >  2:3263248/1‑76 (MQ=255)
   gATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTAc                                                               <  1:4825954/76‑1 (MQ=255)
   gATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTAc                                                               <  2:2852609/76‑1 (MQ=255)
    aTCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACa                                                              >  2:60555/1‑76 (MQ=255)
     tCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAg                                                             >  2:3868457/1‑76 (MQ=255)
       cccTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGc                                                           <  1:386057/76‑1 (MQ=255)
       cccTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGc                                                           >  1:3802775/1‑76 (MQ=255)
        ccTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCt                                                          <  1:401246/76‑1 (MQ=255)
        ccTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCt                                                          >  1:3259380/1‑76 (MQ=255)
         cTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCtt                                                         <  1:690289/76‑1 (MQ=255)
             cgacgCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAg                                                     <  2:2894571/76‑1 (MQ=255)
              gacgCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAgg                                                    <  2:4078854/76‑1 (MQ=255)
              gacgCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAgg                                                    <  1:6306749/76‑1 (MQ=255)
              gacgCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGATATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAgg                                                    <  1:1418929/76‑1 (MQ=255)
                 gCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCg                                                 >  1:611474/1‑76 (MQ=255)
                 gCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCg                                                 >  1:1204695/1‑76 (MQ=255)
                    cGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTa                                              >  2:4133096/1‑76 (MQ=255)
                    cGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTa                                              >  2:2181596/1‑76 (MQ=255)
                    cGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTa                                              <  1:2079635/76‑1 (MQ=255)
                    cGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTa                                              <  1:167813/76‑1 (MQ=255)
                     gCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTaa                                             <  2:6157756/76‑1 (MQ=255)
                      cAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGATATGCTTACAGGCTTTAAGGTCGTTaa                                             >  2:4488183/1‑76 (MQ=255)
                        aaGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGcc                                          >  1:1184587/1‑76 (MQ=255)
                         aGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCa                                         >  2:3312516/1‑76 (MQ=255)
                         aGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCa                                         >  2:4852848/1‑76 (MQ=255)
                         aGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCa                                         >  2:2732771/1‑76 (MQ=255)
                          gCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAt                                        <  1:4703262/76‑1 (MQ=255)
                          gCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAt                                        <  1:4904222/76‑1 (MQ=255)
                          gCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAt                                        >  2:5394928/1‑76 (MQ=255)
                          gCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAt                                        <  2:4698908/76‑1 (MQ=255)
                           cTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAtt                                       <  2:4887898/76‑1 (MQ=255)
                           cTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAtt                                       >  1:2704850/1‑76 (MQ=255)
                           cTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAtt                                       >  1:6609069/1‑76 (MQ=255)
                            ttGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAttt                                      >  2:4841539/1‑76 (MQ=255)
                            ttGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAttt                                      >  2:5141119/1‑76 (MQ=255)
                            ttGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAttt                                      >  1:5040865/1‑76 (MQ=255)
                             tGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCAtttt                                     >  1:6407414/1‑76 (MQ=255)
                              gAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATTCTTACAGGCTTTAAGGTCGTTAAGCCATTTTg                                    <  1:5956495/76‑1 (MQ=255)
                              gAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTg                                    <  1:5762723/76‑1 (MQ=255)
                               aataatGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGc                                   >  2:3145172/1‑76 (MQ=255)
                               aataatGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGc                                   >  2:1463198/1‑76 (MQ=255)
                                ataatGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCg                                  >  2:3399016/1‑76 (MQ=255)
                                 taatGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCgg                                 >  2:3724002/1‑76 (MQ=255)
                                  aatGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGt                                >  2:6529845/1‑76 (MQ=255)
                                   atGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTAAAGCCATTTTGCGGTg                               >  1:4148931/1‑76 (MQ=255)
                                    tGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTgg                              >  1:6262477/1‑76 (MQ=255)
                                    tGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTgg                              >  2:4222127/1‑76 (MQ=255)
                                    tGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTgg                              >  2:2048560/1‑76 (MQ=255)
                                    tGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTgg                              >  1:1053212/1‑76 (MQ=255)
                                     ggCGCAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGa                             <  2:1910030/76‑1 (MQ=255)
                                      gcgcAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGaa                            <  1:260640/76‑1 (MQ=255)
                                       cgcAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAg                           >  2:763343/1‑76 (MQ=255)
                                         cAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGc                         >  2:4697842/1‑76 (MQ=255)
                                         cAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGc                         >  1:1995197/1‑76 (MQ=255)
                                         cAGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGc                         >  1:4519066/1‑76 (MQ=255)
                                          aGCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGcc                        >  1:3517234/1‑76 (MQ=255)
                                          aGCGACACTGCTATTTTCATCGGCGAAGGATGCTTACAGGCTTTAAGGGCGTTAAGCCATTTTGCGGTGGAAGGcc                        <  1:2679549/76‑1 (MQ=255)
                                           gCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCca                       <  1:2990024/76‑1 (MQ=255)
                                           gCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCca                       <  2:2773504/76‑1 (MQ=255)
                                           gCGACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCca                       <  2:3868009/76‑1 (MQ=255)
                                             gACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCcaca                     >  2:5356337/1‑76 (MQ=255)
                                             gACACTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCcaca                     <  2:6288228/76‑1 (MQ=255)
                                              acacTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACAt                    <  1:1056313/76‑1 (MQ=255)
                                              acacTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACAt                    <  2:1865826/76‑1 (MQ=255)
                                               cacTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATc                   >  1:6413720/1‑76 (MQ=255)
                                                acTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCg                  <  2:2599649/76‑1 (MQ=255)
                                                acTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCg                  <  1:1405807/76‑1 (MQ=255)
                                                acTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCg                  >  1:4403194/1‑76 (MQ=255)
                                                acTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCg                  <  1:1690799/76‑1 (MQ=255)
                                                 cTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGc                 <  2:2429192/76‑1 (MQ=255)
                                                 cTGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGc                 <  2:2004331/76‑1 (MQ=255)
                                                  tGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGct                >  1:1496456/1‑76 (MQ=255)
                                                  tGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGct                <  2:5496005/76‑1 (MQ=255)
                                                  tGCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGct                <  2:5966149/76‑1 (MQ=255)
                                                   gCTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGctc               >  1:2982572/1‑76 (MQ=255)
                                                    cTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGctct              >  1:805601/1‑76 (MQ=255)
                                                    cTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGctct              >  1:5060134/1‑76 (MQ=255)
                                                    cTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGctct              >  2:6153193/1‑76 (MQ=255)
                                                    cTATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGctct              <  1:2404811/76‑1 (MQ=255)
                                                     tATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTg             >  2:4504421/1‑76 (MQ=255)
                                                     tATTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTg             <  2:4531277/76‑1 (MQ=255)
                                                      aTTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTgg            <  1:1803108/76‑1 (MQ=255)
                                                      aTTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTgg            >  1:5327001/1‑76 (MQ=255)
                                                      aTTTTCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTgg            >  2:6416197/1‑76 (MQ=255)
                                                       ttttCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGgc           >  1:714457/1‑76 (MQ=255)
                                                       ttttCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGgc           >  2:718925/1‑76 (MQ=255)
                                                        tttCTTCGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGgcg          >  2:2363651/1‑76 (MQ=255)
                                                          tcttcGGCGAAGAATGCTTACAGGCTTTAAGGCCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGgcgcg        >  2:2937725/1‑76 (MQ=255)
                                                           cttcGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGgcgcgc       >  1:3594993/1‑76 (MQ=255)
                                                            ttcGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCt      >  1:6195124/1‑76 (MQ=255)
                                                             tcGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCTc     <  1:5251487/76‑1 (MQ=255)
                                                              cGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCTCa    <  2:4921633/76‑1 (MQ=255)
                                                              cGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCTCa    <  2:2179859/76‑1 (MQ=255)
                                                              cGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCTCa    >  2:4334226/1‑76 (MQ=255)
                                                              cGGCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCTCa    >  1:146118/1‑76 (MQ=255)
                                                               ggCGAAGAATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCTCAg   >  2:1292625/1‑76 (MQ=255)
                                                                       |                                                                     
AGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTTCTTCGGCGAAGATATGCTTACAGGCTTTAAGGTCGTTAAGCCATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCTCAGC  >  REL606/1305898‑1306038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: